home > biosample > SAMEA4588437
identifier SAMEA4588437
type biosample
sameAs
sra-sample  ERS2409159
organism human gut metagenome
attributes
ENA first public  2018-04-17
ENA last update  2018-04-17
ENA-CHECKLIST  ERC000011
External Id  SAMEA4588437
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-04-17T17:03:04Z
INSDC last update  2018-04-17T08:42:35Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000066528
acid_reflux  I do not have this condition
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  70+
age years  72
age_corrected  72
alcohol consumption  Yes
alcohol_frequency  Rarely (a few times/month)
alcohol_types  Unspecified
alcohol_types_beercider  Yes
alcohol_types_red_wine  Yes
alcohol_types_sour_beers  No
alcohol_types_spiritshard_alcohol  No
alcohol_types_unspecified  No
alcohol_types_white_wine  No
allergic to i have no food allergies that i know of  Yes
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
anonymized name  000066528
antibiotic_history  Year
appendix_removed  No
artificial_sweeteners  Never
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1945
bmi  19.2
bmi_cat  Normal
bmi_corrected  19.2
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  Five or more
bowel_movement_quality  I tend to have diarrhea (watery stool) - Type 5, 6 and 7
breastmilk_formula_ensure  No
cancer  Diagnosed by a medical professional (doctor, physician assistant)
cancer treatment  Chemotherapy
cardiovascular_disease  I do not have this condition
cat  Yes
cdiff  I do not have this condition
census_region  Unspecified
chickenpox  Not sure
clinical condition  I do not have this condition
collection date  2018-02-22
collection month  February
collection season  Winter
collection time  22:00
collection_timestamp  02/22/2018 22:00
consume_animal_products_abx  Not sure
contraceptive  No
cosmetics_frequency  Never
country  USA
country of birth  United States
country_residence  United States
csection  No
deodorant_use  I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Unspecified
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  Bottled
drinks_per_session  1
economic_region  Unspecified
elevation  Unspecified
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Occasionally (1-2 times/week)
exercise_location  Both
fed_as_infant  Primarily breast milk
fermented_plant_frequency  Rarely (less than once/week)
flossing_frequency  Daily
flu_vaccine_date  6 months
frozen_dessert_frequency  Rarely (less than once/week)
fruit_frequency  Regularly (3-5 times/week)
fungal_overgrowth  I do not have this condition
geo loc name  USA:Unspecified
gluten  No
height cm  175
height_units  centimeters
high_fat_red_meat_frequency  Occasionally (1-2 times/week)
homecooked_meals_frequency  Regularly (3-5 times/week)
host common name  human
host subject id  980181c2a12c1d20a7c0394eb26875bf52e9c6e5fb105405dc50ac38ce73e223a247e050465d5486aa0a6f641e6bfabf07ccf51aa7dca0385031863dae89ae27
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  I do not have this condition
kidney_disease  I do not have this condition
lactose  No
last_move  I have lived in my current state of residence for more than a year.
last_travel  I have not been outside of my country of residence in the past year.
latitude  Unspecified
level_of_education  Some college or technical school
liver_disease  I do not have this condition
livingwith  No
longitude  Unspecified
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Occasionally (1-2 times/week)
mental_illness  No
mental_illness_type  Unspecified
mental_illness_type_anorexia_nervosa  No
mental_illness_type_bipolar_disorder  No
mental_illness_type_bulimia_nervosa  No
mental_illness_type_depression  No
mental_illness_type_ptsd_posttraumatic_stress_disorder  No
mental_illness_type_schizophrenia  No
mental_illness_type_substance_abuse  No
mental_illness_type_unspecified  Yes
migraine  I do not have this condition
milk_cheese_frequency  Regularly (3-5 times/week)
milk_substitute_frequency  Never
multivitamin  Yes
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  No
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  Yes
olive_oil  Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency  Daily
other_supplement_frequency  No
pets_other  No
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Never
poultry_frequency  Rarely (less than once/week)
pregnant  Unspecified
prepared_meals_frequency  Occasionally (1-2 times/week)
probiotic_frequency  Never
public  Yes
race  Caucasian
ready_to_eat_meals_frequency  Never
red_meat_frequency  Rarely (less than once/week)
roommates_in_study  No
salted_snacks_frequency  Rarely (less than once/week)
sample name  qiita_sid_10317:10317.000066528
sample type  Stool
seafood_frequency  Rarely (less than once/week)
seasonal_allergies  No
sex  male
sibo  Diagnosed by a medical professional (doctor, physician assistant)
skin_condition  I do not have this condition
sleep_duration  5-6 hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
specialized_diet_exclude_dairy  No
specialized_diet_exclude_nightshades  No
specialized_diet_exclude_refined_sugars  No
specialized_diet_fodmap  No
specialized_diet_halaal  No
specialized_diet_i_do_not_eat_a_specialized_diet  Yes
specialized_diet_kosher  No
specialized_diet_modified_paleo_diet  No
specialized_diet_other_restrictions_not_described_here  No
specialized_diet_paleodiet_or_primal_diet  No
specialized_diet_raw_food_diet  No
specialized_diet_unspecified  No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo  No
state  Unspecified
subset_age  false
subset_antibiotic_history  false
subset_bmi  true
subset_diabetes  true
subset_healthy  false
subset_ibd  true
sugar_sweetened_drink_frequency  Rarely (less than once/week)
sugary_sweets_frequency  Occasionally (1-2 times/week)
survey_id  e0a6cf0db5bfc401
teethbrushing_frequency  Daily
thyroid  Diagnosed by a medical professional (doctor, physician assistant)
tonsils_removed  No
types_of_plants  11 to 20
vegetable_frequency  Regularly (3-5 times/week)
vitamin_b_supplement_frequency  Daily
vitamin_d_supplement_frequency  Rarely (a few times/month)
vivid_dreams  Never
weight kg  58
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Occasionally (1-2 times/week)
whole_grain_frequency  Regularly (3-5 times/week)
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2523883ERR4019363
sra-submission  ERA1313020ERA2421689
sra-study  ERP012803
sra-sample  ERS2409159
sra-experiment  ERX2542764ERX4020751
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-04-18T08:06:39Z
dateModified 2021-08-21T18:15:10Z
datePublished 2018-04-17T00:00:00Z