home > biosample > SAMEA4662184
identifier SAMEA4662184
type biosample
sameAs
sra-sample  ERS2482808
organism human vaginal metagenome
attributes
ENA first public  2018-05-12
ENA last update  2018-05-11
ENA-CHECKLIST  ERC000011
External Id  SAMEA4662184
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-05-12T17:02:51Z
INSDC last update  2018-05-11T22:20:45Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000003512
acid_reflux  I do not have this condition
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  30s
age years  38
age_corrected  38
alcohol consumption  Yes
alcohol_frequency  Rarely (a few times/month)
alcohol_types  Unspecified
alcohol_types_beercider  No
alcohol_types_red_wine  Yes
alcohol_types_sour_beers  No
alcohol_types_spiritshard_alcohol  No
alcohol_types_unspecified  No
alcohol_types_white_wine  Yes
allergic to i have no food allergies that i know of  Yes
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
anonymized name  000003512
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  Yes
artificial_sweeteners  Never
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1979
bmi  24.28
bmi_cat  Normal
bmi_corrected  24.28
body habitat  UBERON:vagina
body product  UBERON:mucus
body site  UBERON:vaginal introitus
bowel_movement_frequency  One
bowel_movement_quality  I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure  No
cancer  I do not have this condition
cancer treatment  Unspecified
cardiovascular_disease  I do not have this condition
cat  No
cdiff  I do not have this condition
census_region  Unspecified
chickenpox  Yes
clinical condition  I do not have this condition
collection date  2018-01-28
collection month  January
collection season  Winter
collection time  23:45
collection_timestamp  01/28/2018 23:45
consume_animal_products_abx  Not sure
contraceptive  No
cosmetics_frequency  Never
country  USA
country of birth  Russian Federation
country_residence  United States
csection  No
deodorant_use  I use deodorant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Omnivore
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  City
drinks_per_session  1
economic_region  Unspecified
elevation  Unspecified
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-vaginal
env_material  mucus
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Rarely (a few times/month)
exercise_location  Indoors
fed_as_infant  Primarily breast milk
fermented_plant_frequency  Never
flossing_frequency  Regularly (3-5 times/week)
flu_vaccine_date  6 months
frozen_dessert_frequency  Rarely (less than once/week)
fruit_frequency  Occasionally (1-2 times/week)
fungal_overgrowth  I do not have this condition
geo loc name  USA:Unspecified
gluten  I do not eat gluten because it makes me feel bad
height cm  170
height_units  centimeters
high_fat_red_meat_frequency  Regularly (3-5 times/week)
homecooked_meals_frequency  Daily
host  237ecc293fafcbafce08134589475004698ea4bde9d93fb6fa985a5611df783634eeacec3441c08a1093ec4bb58819fbce7dd469463022c0666c93d24cdc8047
host common name  human
host taxid  9606
ibd  Diagnosed by a medical professional (doctor, physician assistant)
ibd diagnosis  Crohn's disease
ibd_diagnosis_refined  Ileal Crohn's Disease
ibs  I do not have this condition
kidney_disease  I do not have this condition
lactose  No
last_move  I have lived in my current state of residence for more than a year.
last_travel  3 months
latitude  Unspecified
level_of_education  Bachelor's degree
liver_disease  I do not have this condition
livingwith  No
longitude  Unspecified
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Daily
mental_illness  No
mental_illness_type  Unspecified
mental_illness_type_anorexia_nervosa  No
mental_illness_type_bipolar_disorder  No
mental_illness_type_bulimia_nervosa  No
mental_illness_type_depression  No
mental_illness_type_ptsd_posttraumatic_stress_disorder  No
mental_illness_type_schizophrenia  No
mental_illness_type_substance_abuse  No
mental_illness_type_unspecified  Yes
migraine  I do not have this condition
milk_cheese_frequency  Daily
milk_substitute_frequency  Never
multivitamin  No
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  No
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  Yes
olive_oil  Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency  Regularly (3-5 times/week)
other_supplement_frequency  No
pets_other  No
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Never
poultry_frequency  Regularly (3-5 times/week)
pregnant  No
prepared_meals_frequency  Occasionally (1-2 times/week)
probiotic_frequency  Rarely (a few times/month)
public  Yes
race  Caucasian
ready_to_eat_meals_frequency  Never
red_meat_frequency  Daily
roommates_in_study  No
salted_snacks_frequency  Rarely (less than once/week)
sample name  qiita_sid_10317:10317.000003512
sample type  Vaginal mucus
seafood_frequency  Regularly (3-5 times/week)
seasonal_allergies  Yes
sex  male
sibo  I do not have this condition
skin_condition  I do not have this condition
sleep_duration  7-8 hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
specialized_diet_exclude_dairy  No
specialized_diet_exclude_nightshades  No
specialized_diet_exclude_refined_sugars  No
specialized_diet_fodmap  No
specialized_diet_halaal  No
specialized_diet_i_do_not_eat_a_specialized_diet  Yes
specialized_diet_kosher  No
specialized_diet_modified_paleo_diet  No
specialized_diet_other_restrictions_not_described_here  No
specialized_diet_paleodiet_or_primal_diet  No
specialized_diet_raw_food_diet  No
specialized_diet_unspecified  No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo  No
state  Unspecified
subset_age  true
subset_antibiotic_history  true
subset_bmi  true
subset_diabetes  true
subset_healthy  false
subset_ibd  false
sugar_sweetened_drink_frequency  Never
sugary_sweets_frequency  Rarely (less than once/week)
survey_id  6d3b3e927adbbd6f
teethbrushing_frequency  Daily
thyroid  I do not have this condition
tonsils_removed  No
types_of_plants  6 to 10
vegetable_frequency  Regularly (3-5 times/week)
vitamin_b_supplement_frequency  Rarely (a few times/month)
vitamin_d_supplement_frequency  Occasionally (1-2 times/week)
vivid_dreams  Never
weight kg  70
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Regularly (3-5 times/week)
whole_grain_frequency  Rarely (less than once/week)
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2579372
sra-submission  ERA1484938
sra-study  ERP012803
sra-sample  ERS2482808
sra-experiment  ERX2596363
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-07-03T14:13:39Z
dateModified 2021-08-21T22:28:57Z
datePublished 2018-05-12T00:00:00Z