home > biosample > SAMEA4662187
identifier SAMEA4662187
type biosample
sameAs
sra-sample  ERS2482811
organism human gut metagenome
attributes
ENA first public  2018-05-12
ENA last update  2018-05-11
ENA-CHECKLIST  ERC000011
External Id  SAMEA4662187
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-05-12T17:02:51Z
INSDC last update  2018-05-11T22:20:45Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000015574
acid_reflux  I do not have this condition
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  50s
age years  50
age_corrected  50
alcohol consumption  Yes
alcohol_frequency  Rarely (a few times/month)
alcohol_types  Unspecified
alcohol_types_beercider  Yes
alcohol_types_red_wine  Yes
alcohol_types_sour_beers  No
alcohol_types_spiritshard_alcohol  Yes
alcohol_types_unspecified  No
alcohol_types_white_wine  No
allergic to i have no food allergies that i know of  No
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  Yes
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
anonymized name  000015574
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  No
artificial_sweeteners  Rarely (a few times/month)
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1967
bmi  25
bmi_cat  Normal
bmi_corrected  25
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  One
bowel_movement_quality  I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure  No
cancer  I do not have this condition
cancer treatment  Unspecified
cardiovascular_disease  I do not have this condition
cat  No
cdiff  I do not have this condition
census_region  Unspecified
chickenpox  No
clinical condition  I do not have this condition
collection date  03/09/2018
collection month  March
collection season  Spring
collection time  11:30
collection_timestamp  03/09/2018 11:30
consume_animal_products_abx  Not sure
contraceptive  No
cosmetics_frequency  Never
country  USA
country of birth  United States
country_residence  United States
csection  No
deodorant_use  I use deodorant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Omnivore
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  Bottled
drinks_per_session  1-2
economic_region  Unspecified
elevation  Unspecified
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Regularly (3-5 times/week)
exercise_location  Indoors
fed_as_infant  Not sure
fermented_plant_frequency  Rarely (less than once/week)
flossing_frequency  Occasionally (1-2 times/week)
flu_vaccine_date  I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency  Rarely (less than once/week)
fruit_frequency  Occasionally (1-2 times/week)
fungal_overgrowth  I do not have this condition
geo loc name  USA:Unspecified
gluten  No
height cm  190
height_units  centimeters
high_fat_red_meat_frequency  Regularly (3-5 times/week)
homecooked_meals_frequency  Unspecified
host  2a5d2cea8f984f200325bced9652dd422295afd03ca01c0bdff166be2deee463b2af8d816b1295d08286264522b6cebde06cbfbd8cb5f2402d59e37771c0f5f4
host common name  human
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  I do not have this condition
kidney_disease  I do not have this condition
lactose  Yes
last_move  I have lived in my current state of residence for more than a year.
last_travel  Month
latitude  Unspecified
level_of_education  Graduate or Professional degree
liver_disease  I do not have this condition
livingwith  No
longitude  Unspecified
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Regularly (3-5 times/week)
mental_illness  No
mental_illness_type  Unspecified
mental_illness_type_anorexia_nervosa  No
mental_illness_type_bipolar_disorder  No
mental_illness_type_bulimia_nervosa  No
mental_illness_type_depression  No
mental_illness_type_ptsd_posttraumatic_stress_disorder  No
mental_illness_type_schizophrenia  No
mental_illness_type_substance_abuse  No
mental_illness_type_unspecified  Yes
migraine  I do not have this condition
milk_cheese_frequency  Occasionally (1-2 times/week)
milk_substitute_frequency  Occasionally (1-2 times/week)
multivitamin  Yes
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  No
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  Yes
olive_oil  Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency  Daily
other_supplement_frequency  Yes
pets_other  No
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Rarely (a few times/month)
poultry_frequency  Regularly (3-5 times/week)
pregnant  No
prepared_meals_frequency  Occasionally (1-2 times/week)
probiotic_frequency  Regularly (3-5 times/week)
public  Yes
race  Hispanic
ready_to_eat_meals_frequency  Rarely (less than once/week)
red_meat_frequency  Occasionally (1-2 times/week)
roommates_in_study  No
salted_snacks_frequency  Occasionally (1-2 times/week)
sample name  qiita_sid_10317:10317.000015574
sample type  Stool
seafood_frequency  Never
seasonal_allergies  Yes
sex  male
sibo  I do not have this condition
skin_condition  I do not have this condition
sleep_duration  6-7 hours
smoking_frequency  Never
softener  Yes
specialized_diet  Unspecified
specialized_diet_exclude_dairy  No
specialized_diet_exclude_nightshades  No
specialized_diet_exclude_refined_sugars  No
specialized_diet_fodmap  No
specialized_diet_halaal  No
specialized_diet_i_do_not_eat_a_specialized_diet  No
specialized_diet_kosher  No
specialized_diet_modified_paleo_diet  Yes
specialized_diet_other_restrictions_not_described_here  No
specialized_diet_paleodiet_or_primal_diet  No
specialized_diet_raw_food_diet  No
specialized_diet_unspecified  No
specialized_diet_westenprice_or_other_lowgrain_low_processed_fo  No
state  Unspecified
subset_age  true
subset_antibiotic_history  true
subset_bmi  true
subset_diabetes  true
subset_healthy  true
subset_ibd  true
sugar_sweetened_drink_frequency  Rarely (less than once/week)
sugary_sweets_frequency  Occasionally (1-2 times/week)
survey_id  5fc857f4b4146766
teethbrushing_frequency  Daily
thyroid  I do not have this condition
tonsils_removed  No
types_of_plants  11 to 20
vegetable_frequency  Regularly (3-5 times/week)
vitamin_b_supplement_frequency  Daily
vitamin_d_supplement_frequency  Daily
vivid_dreams  Rarely (a few times/month)
weight kg  90
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Regularly (3-5 times/week)
whole_grain_frequency  Regularly (3-5 times/week)
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2579375
sra-submission  ERA1484938
sra-study  ERP012803
sra-sample  ERS2482811
sra-experiment  ERX2596366
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-07-03T14:13:40Z
dateModified 2021-08-21T22:28:56Z
datePublished 2018-05-12T00:00:00Z