home > biosample > SAMEA4670559
identifier SAMEA4670559
type biosample
sameAs
sra-sample  ERS2491172
organism human gut metagenome
attributes
ENA first public  2018-05-19
ENA last update  2018-05-19
ENA-CHECKLIST  ERC000011
External Id  SAMEA4670559
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-05-19T17:02:54Z
INSDC last update  2018-05-19T16:46:48Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000047306
acid_reflux  Unspecified
acne medication  No
acne_medication_otc  No
add_adhd  Unspecified
age cat  50s
age years  53
age_corrected  53
alcohol consumption  Yes
alcohol_frequency  Regularly (3-5 times/week)
alcohol_types  Unspecified
alcohol_types_beercider  No
alcohol_types_red_wine  No
alcohol_types_sour_beers  No
alcohol_types_spiritshard_alcohol  No
alcohol_types_unspecified  Yes
alcohol_types_white_wine  No
allergic to i have no food allergies that i know of  No
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  Yes
alzheimers  Unspecified
anonymized name  47306
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  No
artificial_sweeteners  Unspecified
asd  Unspecified
assigned_from_geo  Yes
autoimmune  Unspecified
birth year  1962
bmi  26.54
bmi_cat  Overweight
bmi_corrected  26.54
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  Unspecified
bowel_movement_quality  Unspecified
breastmilk_formula_ensure  Unspecified
cancer  Unspecified
cancer treatment  Unspecified
cardiovascular_disease  Unspecified
cat  Yes
cdiff  Unspecified
census_region  South
chickenpox  Yes
clinical condition  Unspecified
collection date  4/15/16
collection month  April
collection season  Spring
collection time  12:00
collection_timestamp  4/15/16 12:00
consume_animal_products_abx  Unspecified
contraceptive  Unspecified
cosmetics_frequency  Never
country  USA
country of birth  United States
country_residence  Unspecified
csection  No
deodorant_use  I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Omnivore
dna_extracted  Yes
dog  Yes
dominant hand  I am right handed
drinking_water_source  Well
drinks_per_session  Unspecified
economic_region  Southeast
elevation  274.1
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  Unspecified
exercise_frequency  Regularly (3-5 times/week)
exercise_location  Both
fed_as_infant  Unspecified
fermented_plant_frequency  Unspecified
flossing_frequency  Regularly (3-5 times/week)
flu_vaccine_date  6 months
frozen_dessert_frequency  Unspecified
fruit_frequency  Unspecified
fungal_overgrowth  Unspecified
geo loc name  USA:TN
gluten  No
height cm  180
height_units  centimeters
high_fat_red_meat_frequency  Unspecified
homecooked_meals_frequency  Unspecified
host common name  human
host subject id  466d3f6060c9c231e44f716ffe410acb6ef4f36bee4a5e7117c7f36c8814eb2ad2e1fdea53556ec9edee6a58bc11fd388ee263ab4284f31153e76f3425bb41a5
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  Unspecified
kidney_disease  Unspecified
lactose  No
last_move  Unspecified
last_travel  3 months
latitude  35.8
level_of_education  Unspecified
liver_disease  Unspecified
livingwith  No
longitude  -86.1
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Unspecified
mental_illness  Unspecified
mental_illness_type  Unspecified
migraine  I do not have this condition
milk_cheese_frequency  Unspecified
milk_substitute_frequency  Unspecified
multivitamin  No
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  No
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  Yes
olive_oil  Unspecified
one_liter_of_water_a_day_frequency  Unspecified
other_supplement_frequency  Yes
pets_other  Unspecified
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Rarely (a few times/month)
poultry_frequency  Unspecified
pregnant  Unspecified
prepared_meals_frequency  Unspecified
probiotic_frequency  Unspecified
public  Yes
race  Caucasian
ready_to_eat_meals_frequency  Unspecified
red_meat_frequency  Unspecified
roommates  Three
roommates_in_study  Unspecified
salted_snacks_frequency  Unspecified
sample name  qiita_sid_10317:10317.000047306
sample type  Stool
seafood_frequency  Unspecified
seasonal_allergies  No
sex  male
sibo  Unspecified
skin_condition  I do not have this condition
sleep_duration  6-7 hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
state  TN
subset_age  true
subset_antibiotic_history  true
subset_bmi  true
subset_diabetes  true
subset_healthy  true
subset_ibd  true
sugar_sweetened_drink_frequency  Unspecified
sugary_sweets_frequency  Unspecified
survey_id  e943a2106b463b0c
teethbrushing_frequency  Daily
thyroid  Unspecified
tonsils_removed  No
types_of_plants  21 to 30
vegetable_frequency  Unspecified
vioscreen_a_bev  Unspecified
vioscreen_a_cal  Unspecified
vioscreen_acesupot  Unspecified
vioscreen_activity_level  Unspecified
vioscreen_add_sug  Unspecified
vioscreen_addsugar  Unspecified
vioscreen_adsugtot  Unspecified
vioscreen_age  Unspecified
vioscreen_alanine  Unspecified
vioscreen_alcohol  Unspecified
vioscreen_alcohol_servings  Unspecified
vioscreen_alphacar  Unspecified
vioscreen_alphtoce  Unspecified
vioscreen_alphtoco  Unspecified
vioscreen_arginine  Unspecified
vioscreen_ash  Unspecified
vioscreen_aspartam  Unspecified
vioscreen_aspartic  Unspecified
vioscreen_avcarb  Unspecified
vioscreen_bcodeid  Unspecified
vioscreen_betacar  Unspecified
vioscreen_betacryp  Unspecified
vioscreen_betaine  Unspecified
vioscreen_betatoco  Unspecified
vioscreen_biochana  Unspecified
vioscreen_bmi  Unspecified
vioscreen_caffeine  Unspecified
vioscreen_calcium  Unspecified
vioscreen_calcium_avg  Unspecified
vioscreen_calcium_dose  Unspecified
vioscreen_calcium_freq  Unspecified
vioscreen_calcium_from_dairy_servings  Unspecified
vioscreen_calcium_servings  Unspecified
vioscreen_calories  Unspecified
vioscreen_carbo  Unspecified
vioscreen_cholest  Unspecified
vioscreen_choline  Unspecified
vioscreen_clac9t11  Unspecified
vioscreen_clat10c12  Unspecified
vioscreen_copper  Unspecified
vioscreen_coumest  Unspecified
vioscreen_cystine  Unspecified
vioscreen_d_cheese  Unspecified
vioscreen_d_milk  Unspecified
vioscreen_d_tot_soym  Unspecified
vioscreen_d_total  Unspecified
vioscreen_d_yogurt  Unspecified
vioscreen_daidzein  Unspecified
vioscreen_database  Unspecified
vioscreen_delttoco  Unspecified
vioscreen_discfat_oil  Unspecified
vioscreen_discfat_sol  Unspecified
vioscreen_dob  Unspecified
vioscreen_eer  Unspecified
vioscreen_email  Unspecified
vioscreen_erythr  Unspecified
vioscreen_f_citmlb  Unspecified
vioscreen_f_nj_citmlb  Unspecified
vioscreen_f_nj_other  Unspecified
vioscreen_f_nj_total  Unspecified
vioscreen_f_other  Unspecified
vioscreen_f_total  Unspecified
vioscreen_fat  Unspecified
vioscreen_fiber  Unspecified
vioscreen_fibh2o  Unspecified
vioscreen_fibinso  Unspecified
vioscreen_finished  Unspecified
vioscreen_fish_servings  Unspecified
vioscreen_fol_deqv  Unspecified
vioscreen_fol_nat  Unspecified
vioscreen_fol_syn  Unspecified
vioscreen_formontn  Unspecified
vioscreen_fried_fish_servings  Unspecified
vioscreen_fried_food_servings  Unspecified
vioscreen_frt5_day  Unspecified
vioscreen_frtsumm  Unspecified
vioscreen_fructose  Unspecified
vioscreen_fruit_servings  Unspecified
vioscreen_g_nwhl  Unspecified
vioscreen_g_total  Unspecified
vioscreen_g_whl  Unspecified
vioscreen_galactos  Unspecified
vioscreen_gammtoco  Unspecified
vioscreen_gender  Unspecified
vioscreen_genistn  Unspecified
vioscreen_glac  Unspecified
vioscreen_gltc  Unspecified
vioscreen_glucose  Unspecified
vioscreen_glutamic  Unspecified
vioscreen_glycine  Unspecified
vioscreen_glycitn  Unspecified
vioscreen_grams  Unspecified
vioscreen_hei2010_dairy  Unspecified
vioscreen_hei2010_empty_calories  Unspecified
vioscreen_hei2010_fatty_acids  Unspecified
vioscreen_hei2010_fruit  Unspecified
vioscreen_hei2010_greens_beans  Unspecified
vioscreen_hei2010_protien_foods  Unspecified
vioscreen_hei2010_refined_grains  Unspecified
vioscreen_hei2010_score  Unspecified
vioscreen_hei2010_sea_foods_plant_protiens  Unspecified
vioscreen_hei2010_sodium  Unspecified
vioscreen_hei2010_veg  Unspecified
vioscreen_hei2010_whole_fruit  Unspecified
vioscreen_hei2010_whole_grains  Unspecified
vioscreen_hei_drk_g_org_veg_leg  Unspecified
vioscreen_hei_fruit  Unspecified
vioscreen_hei_grains  Unspecified
vioscreen_hei_meat_beans  Unspecified
vioscreen_hei_milk  Unspecified
vioscreen_hei_non_juice_frt  Unspecified
vioscreen_hei_oils  Unspecified
vioscreen_hei_sat_fat  Unspecified
vioscreen_hei_score  Unspecified
vioscreen_hei_sodium  Unspecified
vioscreen_hei_sol_fat_alc_add_sug  Unspecified
vioscreen_hei_veg  Unspecified
vioscreen_hei_whl_grains  Unspecified
vioscreen_height  Unspecified
vioscreen_histidin  Unspecified
vioscreen_inositol  Unspecified
vioscreen_iron  Unspecified
vioscreen_isoleuc  Unspecified
vioscreen_isomalt  Unspecified
vioscreen_joules  Unspecified
vioscreen_juice_servings  Unspecified
vioscreen_lactitol  Unspecified
vioscreen_lactose  Unspecified
vioscreen_legumes  Unspecified
vioscreen_leucine  Unspecified
vioscreen_line_gi  Unspecified
vioscreen_low_fat_dairy_serving  Unspecified
vioscreen_lutzeax  Unspecified
vioscreen_lycopene  Unspecified
vioscreen_lysine  Unspecified
vioscreen_m_egg  Unspecified
vioscreen_m_fish_hi  Unspecified
vioscreen_m_fish_lo  Unspecified
vioscreen_m_frank  Unspecified
vioscreen_m_meat  Unspecified
vioscreen_m_mpf  Unspecified
vioscreen_m_nutsd  Unspecified
vioscreen_m_organ  Unspecified
vioscreen_m_poult  Unspecified
vioscreen_m_soy  Unspecified
vioscreen_magnes  Unspecified
vioscreen_maltitol  Unspecified
vioscreen_maltose  Unspecified
vioscreen_mangan  Unspecified
vioscreen_mannitol  Unspecified
vioscreen_methhis3  Unspecified
vioscreen_methion  Unspecified
vioscreen_mfa141  Unspecified
vioscreen_mfa161  Unspecified
vioscreen_mfa181  Unspecified
vioscreen_mfa201  Unspecified
vioscreen_mfa221  Unspecified
vioscreen_mfatot  Unspecified
vioscreen_multi_calcium_avg  Unspecified
vioscreen_multi_calcium_dose  Unspecified
vioscreen_multivitamin  Unspecified
vioscreen_multivitamin_freq  Unspecified
vioscreen_natoco  Unspecified
vioscreen_nccglbr  Unspecified
vioscreen_nccglgr  Unspecified
vioscreen_niacin  Unspecified
vioscreen_niacineq  Unspecified
vioscreen_nitrogen  Unspecified
vioscreen_non_fried_fish_servings  Unspecified
vioscreen_nutrient_recommendation  Unspecified
vioscreen_omega3  Unspecified
vioscreen_oxalic  Unspecified
vioscreen_oxalicm  Unspecified
vioscreen_pantothe  Unspecified
vioscreen_pectins  Unspecified
vioscreen_pfa182  Unspecified
vioscreen_pfa183  Unspecified
vioscreen_pfa184  Unspecified
vioscreen_pfa204  Unspecified
vioscreen_pfa205  Unspecified
vioscreen_pfa225  Unspecified
vioscreen_pfa226  Unspecified
vioscreen_pfatot  Unspecified
vioscreen_phenylal  Unspecified
vioscreen_phosphor  Unspecified
vioscreen_phytic  Unspecified
vioscreen_pinitol  Unspecified
vioscreen_potass  Unspecified
vioscreen_procdate  Unspecified
vioscreen_proline  Unspecified
vioscreen_protanim  Unspecified
vioscreen_protein  Unspecified
vioscreen_protocol  Unspecified
vioscreen_protveg  Unspecified
vioscreen_questionnaire  Unspecified
vioscreen_recno  Unspecified
vioscreen_retinol  Unspecified
vioscreen_rgrain  Unspecified
vioscreen_ribofla  Unspecified
vioscreen_sacchar  Unspecified
vioscreen_salad_vegetable_servings  Unspecified
vioscreen_satoco  Unspecified
vioscreen_scf  Unspecified
vioscreen_scfv  Unspecified
vioscreen_selenium  Unspecified
vioscreen_serine  Unspecified
vioscreen_sfa100  Unspecified
vioscreen_sfa120  Unspecified
vioscreen_sfa140  Unspecified
vioscreen_sfa160  Unspecified
vioscreen_sfa170  Unspecified
vioscreen_sfa180  Unspecified
vioscreen_sfa200  Unspecified
vioscreen_sfa220  Unspecified
vioscreen_sfa40  Unspecified
vioscreen_sfa60  Unspecified
vioscreen_sfa80  Unspecified
vioscreen_sfatot  Unspecified
vioscreen_sodium  Unspecified
vioscreen_sorbitol  Unspecified
vioscreen_srvid  Unspecified
vioscreen_starch  Unspecified
vioscreen_started  Unspecified
vioscreen_subject_id  Unspecified
vioscreen_sucpoly  Unspecified
vioscreen_sucrlose  Unspecified
vioscreen_sucrose  Unspecified
vioscreen_sweet_servings  Unspecified
vioscreen_tagatose  Unspecified
vioscreen_tfa161t  Unspecified
vioscreen_tfa181t  Unspecified
vioscreen_tfa182t  Unspecified
vioscreen_tgrain  Unspecified
vioscreen_thiamin  Unspecified
vioscreen_threonin  Unspecified
vioscreen_time  Unspecified
vioscreen_totaltfa  Unspecified
vioscreen_totcla  Unspecified
vioscreen_totfolat  Unspecified
vioscreen_totsugar  Unspecified
vioscreen_tryptoph  Unspecified
vioscreen_tyrosine  Unspecified
vioscreen_user_id  Unspecified
vioscreen_v_drkgr  Unspecified
vioscreen_v_orange  Unspecified
vioscreen_v_other  Unspecified
vioscreen_v_potato  Unspecified
vioscreen_v_starcy  Unspecified
vioscreen_v_tomato  Unspecified
vioscreen_v_total  Unspecified
vioscreen_valine  Unspecified
vioscreen_veg5_day  Unspecified
vioscreen_vegetable_servings  Unspecified
vioscreen_vegsumm  Unspecified
vioscreen_visit  Unspecified
vioscreen_vita_iu  Unspecified
vioscreen_vita_rae  Unspecified
vioscreen_vita_re  Unspecified
vioscreen_vitb12  Unspecified
vioscreen_vitb6  Unspecified
vioscreen_vitc  Unspecified
vioscreen_vitd  Unspecified
vioscreen_vitd2  Unspecified
vioscreen_vitd3  Unspecified
vioscreen_vitd_iu  Unspecified
vioscreen_vite_iu  Unspecified
vioscreen_vitk  Unspecified
vioscreen_water  Unspecified
vioscreen_weight  Unspecified
vioscreen_wgrain  Unspecified
vioscreen_whole_grain_servings  Unspecified
vioscreen_xylitol  Unspecified
vioscreen_zinc  Unspecified
vitamin_b_supplement_frequency  Unspecified
vitamin_d_supplement_frequency  Unspecified
vivid_dreams  Unspecified
weight kg  86
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Unspecified
whole_grain_frequency  Unspecified
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2587830
sra-submission  ERA1489869
sra-study  ERP012803
sra-sample  ERS2491172
sra-experiment  ERX2604106
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-07-03T17:43:30Z
dateModified 2021-08-21T22:35:39Z
datePublished 2018-05-19T00:00:00Z