home > biosample > SAMEA4670560
identifier SAMEA4670560
type biosample
sameAs
sra-sample  ERS2491173
organism human gut metagenome
attributes
ENA first public  2018-05-19
ENA last update  2018-05-19
ENA-CHECKLIST  ERC000011
External Id  SAMEA4670560
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2018-05-19T17:02:54Z
INSDC last update  2018-05-19T16:46:48Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000047317
acid_reflux  Unspecified
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  40s
age years  43
age_corrected  43
alcohol consumption  Yes
alcohol_frequency  Occasionally (1-2 times/week)
alcohol_types  Unspecified
alcohol_types_beercider  Yes
alcohol_types_red_wine  Yes
alcohol_types_sour_beers  Yes
alcohol_types_spiritshard_alcohol  Yes
alcohol_types_unspecified  No
alcohol_types_white_wine  No
allergic to i have no food allergies that i know of  Yes
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
anonymized name  47317
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  No
artificial_sweeteners  Unspecified
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1972
bmi  19.37
bmi_cat  Normal
bmi_corrected  19.37
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  Less than one
bowel_movement_quality  I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure  No
cancer  Unspecified
cancer treatment  Unspecified
cardiovascular_disease  I do not have this condition
cat  Yes
cdiff  I do not have this condition
census_region  South
chickenpox  Yes
clinical condition  I do not have this condition
collection date  4/15/16
collection month  April
collection season  Spring
collection time  12:00
collection_timestamp  4/15/16 12:00
consume_animal_products_abx  Yes
contraceptive  No
cosmetics_frequency  Never
country  USA
country of birth  United States
country_residence  Unspecified
csection  No
deodorant_use  I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia  I do not have this condition
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Omnivore
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  Well
drinks_per_session  Unspecified
economic_region  Southeast
elevation  274.1
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Regularly (3-5 times/week)
exercise_location  Both
fed_as_infant  Primarily breast milk
fermented_plant_frequency  Regularly (3-5 times/week)
flossing_frequency  Daily
flu_vaccine_date  I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency  Never
fruit_frequency  Daily
fungal_overgrowth  I do not have this condition
geo loc name  USA:TN
gluten  No
height cm  167
height_units  centimeters
high_fat_red_meat_frequency  Occasionally (1-2 times/week)
homecooked_meals_frequency  Daily
host common name  human
host subject id  56609e82e6dba690eb093dbb3a2e9cdd24f3b5bdc9a3f3caa4aaf16afb804d4aec9147ef2264f18b7d832ed622b2019fe69e7871ff8541916c0d35e0ddf4863e
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  I do not have this condition
kidney_disease  I do not have this condition
lactose  No
last_move  I have lived in my current state of residence for more than a year.
last_travel  1 year
latitude  35.8
level_of_education  Graduate or Professional degree
liver_disease  I do not have this condition
livingwith  No
longitude  -86.1
lowgrain_diet_type  Yes
lung disease  I do not have this condition
meat_eggs_frequency  Regularly (3-5 times/week)
mental_illness  Unspecified
mental_illness_type  Unspecified
migraine  I do not have this condition
milk_cheese_frequency  Rarely (less than once/week)
milk_substitute_frequency  Never
multivitamin  No
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  Yes
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  No
olive_oil  Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency  Daily
other_supplement_frequency  Yes
pets_other  Unspecified
physical_specimen_location  UCSDMI
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Never
poultry_frequency  Occasionally (1-2 times/week)
pregnant  No
prepared_meals_frequency  Rarely (less than once/week)
probiotic_frequency  Never
public  Yes
race  Caucasian
ready_to_eat_meals_frequency  Never
red_meat_frequency  Occasionally (1-2 times/week)
roommates_in_study  Unspecified
salted_snacks_frequency  Rarely (less than once/week)
sample name  qiita_sid_10317:10317.000047317
sample type  Stool
seafood_frequency  Rarely (less than once/week)
seasonal_allergies  No
sex  female
sibo  I do not have this condition
skin_condition  I do not have this condition
sleep_duration  8 or more hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
state  TN
subset_age  true
subset_antibiotic_history  true
subset_bmi  true
subset_diabetes  true
subset_healthy  true
subset_ibd  true
sugar_sweetened_drink_frequency  Never
sugary_sweets_frequency  Rarely (less than once/week)
survey_id  ded1ad7b6abb3499
teethbrushing_frequency  Daily
thyroid  Self-diagnosed
tonsils_removed  No
types_of_plants  Unspecified
vegetable_frequency  Daily
vioscreen_a_bev  0.131534252
vioscreen_a_cal  16.13613683
vioscreen_acesupot  0
vioscreen_add_sug  4.317781464
vioscreen_addsugar  21.68638565
vioscreen_adsugtot  19.02857582
vioscreen_age  215
vioscreen_alanine  3.763315028
vioscreen_alcohol  1.835479318
vioscreen_alcohol_servings  0.13153
vioscreen_alphacar  5402.014726
vioscreen_alphtoce  22.54296072
vioscreen_alphtoco  20.6596158
vioscreen_arginine  4.827752435
vioscreen_ash  32.31603168
vioscreen_aspartam  0
vioscreen_aspartic  8.151727713
vioscreen_avcarb  242.0987158
vioscreen_betacar  39107.66027
vioscreen_betacryp  226.2672945
vioscreen_betaine  160.2668343
vioscreen_betatoco  0.35632876
vioscreen_biochana  0.070602741
vioscreen_caffeine  149.3082192
vioscreen_calcium_from_dairy_servings  0.55751
vioscreen_calcium_servings  3.81307
vioscreen_calories  2381.047945
vioscreen_carbo  302.6115154
vioscreen_cholest  305.9576199
vioscreen_choline  496.4095034
vioscreen_clac9t11  0.128301354
vioscreen_clat10c12  0.025452057
vioscreen_copper  2.616410932
vioscreen_coumest  0.032356166
vioscreen_cystine  1.0242741
vioscreen_d_cheese  0.473397284
vioscreen_d_milk  0.084082193
vioscreen_d_tot_soym  0.557506864
vioscreen_d_total  0.557506864
vioscreen_d_yogurt  0
vioscreen_daidzein  0.94323279
vioscreen_database  NDSR - V44
vioscreen_delttoco  3.580657374
vioscreen_discfat_oil  47.30451627
vioscreen_discfat_sol  35.16320634
vioscreen_dob  1/1/1800
vioscreen_erythr  0.000684932
vioscreen_f_citmlb  0.716383592
vioscreen_f_nj_citmlb  0.710054748
vioscreen_f_nj_other  1.892191848
vioscreen_f_nj_total  2.602246428
vioscreen_f_other  1.892191848
vioscreen_f_total  2.608575356
vioscreen_fat  105.3200771
vioscreen_fiber  60.51400899
vioscreen_fibh2o  13.20314908
vioscreen_fibinso  47.18416096
vioscreen_finished  4/6/15
vioscreen_fish_servings  0.34788
vioscreen_fol_deqv  789.4486301
vioscreen_fol_nat  710.9846318
vioscreen_fol_syn  46.14575128
vioscreen_formontn  0.013424656
vioscreen_fried_fish_servings  0
vioscreen_fried_food_servings  0
vioscreen_frt5_day  3
vioscreen_frtsumm  5.2
vioscreen_fructose  27.54910103
vioscreen_fruit_servings  3
vioscreen_g_nwhl  3.465479853
vioscreen_g_total  5.33394558
vioscreen_g_whl  1.868465727
vioscreen_galactos  0.248136985
vioscreen_gammtoco  17.06210938
vioscreen_gender  F
vioscreen_genistn  1.438164363
vioscreen_glac  109.6877354
vioscreen_gltc  129.6816781
vioscreen_glucose  25.14709172
vioscreen_glutamic  13.54350519
vioscreen_glycine  3.299261224
vioscreen_glycitn  0.211178066
vioscreen_grams  4722.999658
vioscreen_hei2010_dairy  1.8
vioscreen_hei2010_empty_calories  20
vioscreen_hei2010_fatty_acids  7.7
vioscreen_hei2010_fruit  5
vioscreen_hei2010_greens_beans  5
vioscreen_hei2010_protien_foods  5
vioscreen_hei2010_refined_grains  10
vioscreen_hei2010_score  74.7
vioscreen_hei2010_sea_foods_plant_protiens  5
vioscreen_hei2010_sodium  0
vioscreen_hei2010_veg  5
vioscreen_hei2010_whole_fruit  5
vioscreen_hei2010_whole_grains  5.2
vioscreen_hei_drk_g_org_veg_leg  5
vioscreen_hei_fruit  5
vioscreen_hei_grains  3.7
vioscreen_hei_meat_beans  10
vioscreen_hei_milk  1.8
vioscreen_hei_non_juice_frt  5
vioscreen_hei_oils  10
vioscreen_hei_sat_fat  5.8
vioscreen_hei_score  73.9
vioscreen_hei_sodium  0
vioscreen_hei_sol_fat_alc_add_sug  20
vioscreen_hei_veg  5
vioscreen_hei_whl_grains  2.6
vioscreen_histidin  1.968603014
vioscreen_inositol  0.152054795
vioscreen_iron  22.4976723
vioscreen_isoleuc  3.4412601
vioscreen_isomalt  0
vioscreen_joules  9962.29589
vioscreen_juice_servings  0.01266
vioscreen_lactitol  0
vioscreen_lactose  1.293726004
vioscreen_legumes  1.17230141
vioscreen_leucine  5.719396805
vioscreen_line_gi  624.7847175
vioscreen_low_fat_dairy_serving  0
vioscreen_lutzeax  40327.09315
vioscreen_lycopene  13155.88904
vioscreen_lysine  4.769068386
vioscreen_m_egg  1.028493134
vioscreen_m_fish_hi  0.050794523
vioscreen_m_fish_lo  0.147424661
vioscreen_m_frank  0.018273973
vioscreen_m_meat  0.733780869
vioscreen_m_mpf  1.363068547
vioscreen_m_nutsd  0.563232882
vioscreen_m_organ  0
vioscreen_m_poult  0.412767133
vioscreen_m_soy  0.010465754
vioscreen_magnes  602.3976455
vioscreen_maltitol  0
vioscreen_maltose  2.985314774
vioscreen_mangan  8.483837222
vioscreen_mannitol  1.01476708
vioscreen_methhis3  5.95715031
vioscreen_methion  1.399890304
vioscreen_mfa141  0.060986302
vioscreen_mfa161  1.543479606
vioscreen_mfa181  40.25156518
vioscreen_mfa201  0.321561651
vioscreen_mfa221  0.042191785
vioscreen_mfatot  42.42819724
vioscreen_natoco  20.6596158
vioscreen_nccglbr  176.2808861
vioscreen_nccglgr  123.3003211
vioscreen_niacin  19.53575557
vioscreen_niacineq  35.1236997
vioscreen_nitrogen  12.65838506
vioscreen_non_fried_fish_servings  0.34788
vioscreen_nutrient_recommendation  Default
vioscreen_omega3  3.079835657
vioscreen_oxalic  1248.406164
vioscreen_oxalicm  1190.159075
vioscreen_pantothe  7.080520923
vioscreen_pectins  11.25517712
vioscreen_pfa182  20.51638752
vioscreen_pfa183  3.026109335
vioscreen_pfa184  0.001150685
vioscreen_pfa204  0.112328767
vioscreen_pfa205  0.009753425
vioscreen_pfa225  0.007369863
vioscreen_pfa226  0.035808218
vioscreen_pfatot  23.77578125
vioscreen_phenylal  3.631013217
vioscreen_phosphor  1464.370548
vioscreen_phytic  1310.536045
vioscreen_pinitol  0.009589042
vioscreen_potass  5471.891781
vioscreen_procdate  10/28/15
vioscreen_proline  4.091150738
vioscreen_protanim  24.34583423
vioscreen_protein  78.30941246
vioscreen_protocol  Knight Lab, University of Colorado Boulder
vioscreen_protveg  53.96569991
vioscreen_questionnaire  Egg White Standard Questionnaire (V3)
vioscreen_recno  496
vioscreen_retinol  298.9704409
vioscreen_rgrain  2.217123288
vioscreen_ribofla  1.90487696
vioscreen_sacchar  0
vioscreen_salad_vegetable_servings  3.99792
vioscreen_satoco  0
vioscreen_selenium  94.28016909
vioscreen_serine  3.885890344
vioscreen_sfa100  0.659616423
vioscreen_sfa120  0.695890369
vioscreen_sfa140  2.490821483
vioscreen_sfa160  17.42188704
vioscreen_sfa170  0.181205457
vioscreen_sfa180  6.225945794
vioscreen_sfa200  0.251780826
vioscreen_sfa220  0.203863024
vioscreen_sfa40  0.846767227
vioscreen_sfa60  0.492794465
vioscreen_sfa80  0.308986277
vioscreen_sfatot  30.10786601
vioscreen_sodium  6918.732877
vioscreen_sorbitol  0.887671233
vioscreen_srvid  18445
vioscreen_starch  124.3548373
vioscreen_started  4/6/15
vioscreen_sucpoly  0
vioscreen_sucrlose  0
vioscreen_sucrose  29.84252194
vioscreen_sweet_servings  0.09488
vioscreen_tagatose  0.456438373
vioscreen_tfa161t  0.03690411
vioscreen_tfa181t  1.342712319
vioscreen_tfa182t  0.327506894
vioscreen_tgrain  5.228630338
vioscreen_thiamin  1.609917293
vioscreen_threonin  3.089232395
vioscreen_time  24
vioscreen_totaltfa  1.720739746
vioscreen_totcla  0.15441094
vioscreen_totfolat  757.1303938
vioscreen_totsugar  87.50706871
vioscreen_tryptoph  0.937890458
vioscreen_tyrosine  2.515945226
vioscreen_user_id  18445
vioscreen_v_drkgr  2.773068112
vioscreen_v_orange  1.381945132
vioscreen_v_other  1.983287905
vioscreen_v_potato  0.22969862
vioscreen_v_starcy  0.1770137
vioscreen_v_tomato  0.841287691
vioscreen_v_total  7.386300701
vioscreen_valine  3.986301035
vioscreen_veg5_day  13.8
vioscreen_vegetable_servings  7
vioscreen_vegsumm  14.6
vioscreen_visit  1
vioscreen_vita_iu  70866.90959
vioscreen_vita_rae  3792.458219
vioscreen_vita_re  7285.941096
vioscreen_vitb12  1.706383608
vioscreen_vitb6  2.937671567
vioscreen_vitc  266.2016695
vioscreen_vitd  2.717041016
vioscreen_vitd2  0
vioscreen_vitd3  2.717041016
vioscreen_vitd_iu  108.6816406
vioscreen_vite_iu  30.80851884
vioscreen_vitk  1773.057192
vioscreen_water  4218.187671
vioscreen_wgrain  3.01153414
vioscreen_whole_grain_servings  1.86847
vioscreen_xylitol  0.061178087
vioscreen_zinc  15.62665748
vitamin_b_supplement_frequency  Never
vitamin_d_supplement_frequency  Never
vivid_dreams  Unspecified
weight kg  54
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Daily
whole_grain_frequency  Never
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR2587831
sra-submission  ERA1489869
sra-study  ERP012803
sra-sample  ERS2491173
sra-experiment  ERX2604107
distribution JSONJSON-LD
Download
biosample_set.xml.gz  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2018-07-03T17:43:30Z
dateModified 2021-08-21T22:35:40Z
datePublished 2018-05-19T00:00:00Z