ENA first public |
2019-09-24 |
ENA last update |
2021-08-28 |
ENA-CHECKLIST |
ERC000015 |
External Id |
SAMEA5575671 |
INSDC center alias |
Centre for Translational Microbiome Research (CTMR) |
INSDC center name |
Centre for Translational Microbiome Research (CTMR) |
INSDC first public |
2019-09-24T17:09:57Z |
INSDC last update |
2021-08-28T19:08:38Z |
INSDC status |
public |
Submitter Id |
180316-P038_TACGCTGC-ACTGCATA |
collection date |
2006-09-29 |
collection date* |
2006-09-29 |
environment (biome) |
Human gut |
environment (biome)* |
Human gut |
environment (feature) |
Colon |
environment (feature)* |
Colon |
environment (material) |
Faeces |
environment (material)* |
Faeces |
extraction_plate |
27-1881 |
gastrointestinal tract disorder |
hyperplastic polyp |
geographic location (country and/or sea) |
Sweden |
geographic location (latitude) |
59.31 |
geographic location (latitude)* |
59.31 |
geographic location (longitude) |
18.09 |
geographic location (longitude)* |
18.09 |
geographic location (region and locality) |
Stockholm |
host age |
49 |
host body mass index |
26 |
host body product |
Faeces |
host sex |
male |
host subject id |
4178 |
human gut environmental package |
human-gut |
human gut environmental package* |
human-gut |
investigation type |
mimarks-survey |
library screening strategy |
PCR amplification |
pcr primers |
341f/CCTACGGGNGGCWGCAG, 805r/GACTACHVGGGTATCTAATCC |
project name |
PopCol |
sample name |
180316-P038_TACGCTGC-ACTGCATA |
sample storage duration |
12 |
sample storage location |
Swedish Center for Communicable Disease Control |
sample storage temperature |
-80 |
sequencing method |
Illumina |
sequencing run |
180316 |
target gene |
16S rRNA gene |
target subfragment |
16S rRNA, V3-V4 |