| ENA first public |
2019-09-24 |
| ENA last update |
2021-09-13 |
| ENA-CHECKLIST |
ERC000015 |
| External Id |
SAMEA5575761 |
| INSDC center alias |
Centre for Translational Microbiome Research (CTMR) |
| INSDC center name |
Centre for Translational Microbiome Research (CTMR) |
| INSDC first public |
2019-09-24T17:09:57Z |
| INSDC last update |
2021-09-13T11:46:17Z |
| INSDC status |
public |
| Submitter Id |
180316-P197_TCCTGAGC-AAGGCTAT |
| collection date |
2006-08-31 |
| collection date* |
2006-08-31 |
| environment (biome) |
Human gut |
| environment (biome)* |
Human gut |
| environment (feature) |
Colon |
| environment (feature)* |
Colon |
| environment (material) |
Faeces |
| environment (material)* |
Faeces |
| extraction_plate |
27-1889 |
| geographic location (country and/or sea) |
Sweden |
| geographic location (latitude) |
59.31 |
| geographic location (latitude)* |
59.31 |
| geographic location (longitude) |
18.09 |
| geographic location (longitude)* |
18.09 |
| geographic location (region and locality) |
Stockholm |
| host age |
43 |
| host body mass index |
24.6 |
| host body product |
Faeces |
| host disease status |
mild depression |
| host sex |
female |
| host subject id |
5300 |
| human gut environmental package |
human-gut |
| human gut environmental package* |
human-gut |
| investigation type |
mimarks-survey |
| library screening strategy |
PCR amplification |
| pcr primers |
341f/CCTACGGGNGGCWGCAG, 805r/GACTACHVGGGTATCTAATCC |
| project name |
PopCol |
| sample name |
180316-P197_TCCTGAGC-AAGGCTAT |
| sample storage duration |
11 |
| sample storage location |
Swedish Center for Communicable Disease Control |
| sample storage temperature |
-80 |
| sequencing method |
Illumina |
| sequencing run |
180316 |
| target gene |
16S rRNA gene |
| target subfragment |
16S rRNA, V3-V4 |