| Alias |
qiita_sid_10317:10317.000014405 |
| Description |
American Gut Project Stool Sample |
| ENA checklist |
ERC000011 |
| INSDC center name |
UCSDMI |
| INSDC first public |
2017-02-20T17:01:30Z |
| INSDC last update |
2017-08-06T13:16:41Z |
| INSDC status |
public |
| SRA accession |
ERS1564416 |
| Sample Name |
ERS1564416 |
| Title |
10317.000014405 |
| acid_reflux |
Not provided |
| acne_medication |
false |
| acne_medication_otc |
false |
| add_adhd |
I do not have this condition |
| age_cat |
50s |
| age_corrected |
58 |
| age_years |
58 |
| alcohol_consumption |
true |
| alcohol_frequency |
Occasionally (1-2 times/week) |
| alcohol_types |
Not provided |
| alcohol_types_beercider |
No |
| alcohol_types_red_wine |
false |
| alcohol_types_sour_beers |
false |
| alcohol_types_spiritshard_alcohol |
true |
| alcohol_types_unspecified |
false |
| alcohol_types_white_wine |
true |
| allergic_to |
Not provided |
| allergic_to_i_have_no_food_allergies_that_i_know_of |
true |
| allergic_to_other |
false |
| allergic_to_peanuts |
false |
| allergic_to_shellfish |
false |
| allergic_to_tree_nuts |
false |
| allergic_to_unspecified |
false |
| alzheimers |
I do not have this condition |
| anonymized_name |
000014405 |
| antibiotic_history |
I have not taken antibiotics in the past year. |
| appendix_removed |
false |
| artificial_sweeteners |
Not provided |
| asd |
I do not have this condition |
| autoimmune |
I do not have this condition |
| birth_year |
1958 |
| bmi |
25.18 |
| bmi_cat |
Overweight |
| bmi_corrected |
25.18 |
| body_habitat |
UBERON:feces |
| body_product |
UBERON:feces |
| body_site |
UBERON:feces |
| bowel_movement_frequency |
One |
| bowel_movement_quality |
I tend to have normal formed stool - Type 3 and 4 |
| breastmilk_formula_ensure |
false |
| cancer |
Not provided |
| cancer_treatment |
Not provided |
| cardiovascular_disease |
I do not have this condition |
| cat |
true |
| cdiff |
I do not have this condition |
| census_region |
South |
| chickenpox |
Yes |
| clinical_condition |
I do not have this condition |
| collection_date |
11/08/2016 |
| collection_month |
November |
| collection_season |
Fall |
| collection_time |
18:45 |
| collection_timestamp |
2016-11-08 18:45 |
| consume_animal_products_abx |
Yes |
| contraceptive |
No |
| cosmetics_frequency |
Rarely (a few times/month) |
| country |
USA |
| country_of_birth |
United States |
| country_residence |
Not provided |
| csection |
true |
| deodorant_use |
I do not use deodorant or an antiperspirant |
| depression_bipolar_schizophrenia |
I do not have this condition |
| diabetes |
I do not have this condition |
| diabetes_type |
Not provided |
| diet_type |
Omnivore |
| dna_extracted |
true |
| dog |
true |
| dominant_hand |
I am right handed |
| drinking_water_source |
City |
| drinks_per_session |
Not provided |
| economic_region |
Southeast |
| elevation |
5.9 |
| env_biome |
dense settlement biome |
| env_feature |
human-associated habitat |
| env_material |
feces |
| env_package |
human-gut |
| epilepsy_or_seizure_disorder |
I do not have this condition |
| exercise_frequency |
Regularly (3-5 times/week) |
| exercise_location |
Both |
| fed_as_infant |
A mixture of breast milk and formula |
| fermented_plant_frequency |
Rarely (less than once/week) |
| flossing_frequency |
Occasionally (1-2 times/week) |
| flu_vaccine_date |
I have not gotten the flu vaccine in the past year. |
| frozen_dessert_frequency |
Rarely (less than once/week) |
| fruit_frequency |
Rarely (less than once/week) |
| fungal_overgrowth |
I do not have this condition |
| geo_loc_name |
USA:FL |
| gluten |
No |
| has_physical_specimen |
true |
| height_cm |
167 |
| height_units |
centimeters |
| high_fat_red_meat_frequency |
Occasionally (1-2 times/week) |
| homecooked_meals_frequency |
Regularly (3-5 times/week) |
| host_common_name |
Homo sapiens |
| host_subject_id |
3dfa75b55d76f3ec0adc0e40771dbc516670df786b4aca20df47df0c80fd923214a01515dbbecc7c53051967ecff04b16d6a75371259330951d2ade0194ef715 |
| host_taxid |
9606 |
| ibd |
I do not have this condition |
| ibd_diagnosis |
Not provided |
| ibd_diagnosis_refined |
Not provided |
| ibs |
I do not have this condition |
| kidney_disease |
I do not have this condition |
| lactose |
false |
| last_move |
I have lived in my current state of residence for more than a year. |
| last_travel |
Month |
| latitude |
30.3 |
| level_of_education |
Graduate or Professional degree |
| liver_disease |
I do not have this condition |
| livingwith |
Yes |
| longitude |
-81.7 |
| lowgrain_diet_type |
true |
| lung_disease |
I do not have this condition |
| meat_eggs_frequency |
Daily |
| mental_illness |
Not provided |
| mental_illness_type |
Not provided |
| mental_illness_type_anorexia_nervosa |
Not provided |
| mental_illness_type_bipolar_disorder |
Not provided |
| mental_illness_type_bulimia_nervosa |
Not provided |
| mental_illness_type_depression |
Not provided |
| mental_illness_type_ptsd_posttraumatic_stress_disorder |
Not provided |
| mental_illness_type_schizophrenia |
Not provided |
| mental_illness_type_substance_abuse |
Not provided |
| mental_illness_type_unspecified |
Not provided |
| migraine |
I do not have this condition |
| milk_cheese_frequency |
Rarely (less than once/week) |
| milk_substitute_frequency |
Rarely (less than once/week) |
| multivitamin |
false |
| nail_biter |
false |
| non_food_allergies |
Not provided |
| non_food_allergies_beestings |
false |
| non_food_allergies_drug_eg_penicillin |
false |
| non_food_allergies_pet_dander |
false |
| non_food_allergies_poison_ivyoak |
false |
| non_food_allergies_sun |
false |
| non_food_allergies_unspecified |
true |
| olive_oil |
Regularly (3-5 times/week) |
| one_liter_of_water_a_day_frequency |
Occasionally (1-2 times/week) |
| other_supplement_frequency |
true |
| pets_other |
Not provided |
| physical_specimen_location |
UCSDMI |
| physical_specimen_remaining |
true |
| pku |
I do not have this condition |
| pool_frequency |
Regularly (3-5 times/week) |
| poultry_frequency |
Occasionally (1-2 times/week) |
| pregnant |
false |
| prepared_meals_frequency |
Regularly (3-5 times/week) |
| probiotic_frequency |
Never |
| public |
true |
| race |
Caucasian |
| ready_to_eat_meals_frequency |
Rarely (less than once/week) |
| red_meat_frequency |
Occasionally (1-2 times/week) |
| roommates_in_study |
Yes |
| salted_snacks_frequency |
Rarely (less than once/week) |
| sample_type |
Stool |
| seafood_frequency |
Rarely (less than once/week) |
| seasonal_allergies |
No |
| sex |
female |
| sibo |
I do not have this condition |
| skin_condition |
I do not have this condition |
| sleep_duration |
7-8 hours |
| smoking_frequency |
Never |
| softener |
No |
| specialized_diet |
Not provided |
| specialized_diet_exclude_dairy |
Not provided |
| specialized_diet_exclude_nightshades |
Not provided |
| specialized_diet_exclude_refined_sugars |
Not provided |
| specialized_diet_fodmap |
Not provided |
| specialized_diet_halaal |
Not provided |
| specialized_diet_i_do_not_eat_a_specialized_diet |
Not provided |
| specialized_diet_kosher |
Not provided |
| specialized_diet_modified_paleo_diet |
Not provided |
| specialized_diet_other_restrictions_not_described_here |
Not provided |
| specialized_diet_paleodiet_or_primal_diet |
Not provided |
| specialized_diet_raw_food_diet |
Not provided |
| specialized_diet_unspecified |
Not provided |
| specialized_diet_westenprice_or_other_lowgrain_low_processed_fo |
Not provided |
| state |
FL |
| subset_age |
true |
| subset_antibiotic_history |
true |
| subset_bmi |
true |
| subset_diabetes |
true |
| subset_healthy |
true |
| subset_ibd |
true |
| sugar_sweetened_drink_frequency |
Never |
| sugary_sweets_frequency |
Rarely (less than once/week) |
| survey_id |
cd1397cd22be976e |
| teethbrushing_frequency |
Daily |
| thyroid |
I do not have this condition |
| title |
American Gut Project |
| tonsils_removed |
true |
| types_of_plants |
Not provided |
| vegetable_frequency |
Regularly (3-5 times/week) |
| vioscreen_a_bev |
0.906876739 |
| vioscreen_a_cal |
97.02673373 |
| vioscreen_acesupot |
0 |
| vioscreen_activity_level |
Not provided |
| vioscreen_add_sug |
4.189780875 |
| vioscreen_addsugar |
20.35514769 |
| vioscreen_adsugtot |
17.59679474 |
| vioscreen_age |
215 |
| vioscreen_alanine |
2.272301912 |
| vioscreen_alcohol |
13.12090379 |
| vioscreen_alcohol_servings |
0.90688 |
| vioscreen_alphacar |
1957.980308 |
| vioscreen_alphtoce |
9.379040695 |
| vioscreen_alphtoco |
8.435534835 |
| vioscreen_arginine |
2.972766949 |
| vioscreen_ash |
11.81249465 |
| vioscreen_aspartam |
173.4115368 |
| vioscreen_aspartic |
4.472439533 |
| vioscreen_avcarb |
74.63844713 |
| vioscreen_bcodeid |
Not provided |
| vioscreen_betacar |
6803.902055 |
| vioscreen_betacryp |
40.54923213 |
| vioscreen_betaine |
40.22855041 |
| vioscreen_betatoco |
0.295671249 |
| vioscreen_biochana |
0.006547945 |
| vioscreen_bmi |
Not provided |
| vioscreen_caffeine |
139.4887093 |
| vioscreen_calcium |
Not provided |
| vioscreen_calcium_avg |
Not provided |
| vioscreen_calcium_dose |
Not provided |
| vioscreen_calcium_freq |
Not provided |
| vioscreen_calcium_from_dairy_servings |
0.72033 |
| vioscreen_calcium_servings |
1.57055 |
| vioscreen_calories |
1227.833647 |
| vioscreen_carbo |
87.51436216 |
| vioscreen_cholest |
221.8779538 |
| vioscreen_choline |
236.5431293 |
| vioscreen_clac9t11 |
0.120109579 |
| vioscreen_clat10c12 |
0.026931509 |
| vioscreen_copper |
0.801150722 |
| vioscreen_coumest |
0.001041096 |
| vioscreen_cystine |
0.582767267 |
| vioscreen_d_cheese |
0.511643836 |
| vioscreen_d_milk |
0.202438354 |
| vioscreen_d_tot_soym |
0.72032872 |
| vioscreen_d_total |
0.72032872 |
| vioscreen_d_yogurt |
0 |
| vioscreen_daidzein |
0.134794523 |
| vioscreen_database |
NDSR - V44 |
| vioscreen_delttoco |
1.167287665 |
| vioscreen_discfat_oil |
23.02085028 |
| vioscreen_discfat_sol |
33.2742134 |
| vioscreen_dob |
1/1/1800 |
| vioscreen_eer |
Not provided |
| vioscreen_email |
Not provided |
| vioscreen_erythr |
0.0000274 |
| vioscreen_f_citmlb |
0.164000012 |
| vioscreen_f_nj_citmlb |
0.16178083 |
| vioscreen_f_nj_other |
0.201616428 |
| vioscreen_f_nj_total |
0.363397259 |
| vioscreen_f_other |
0.201616428 |
| vioscreen_f_total |
0.36561643 |
| vioscreen_fat |
70.15612158 |
| vioscreen_fiber |
12.82191513 |
| vioscreen_fibh2o |
2.751534073 |
| vioscreen_fibinso |
10.09986355 |
| vioscreen_finished |
1/25/15 |
| vioscreen_fish_servings |
0.29 |
| vioscreen_fol_deqv |
240.4669521 |
| vioscreen_fol_nat |
196.0186644 |
| vioscreen_fol_syn |
26.13279645 |
| vioscreen_formontn |
0.002438356 |
| vioscreen_fried_fish_servings |
0.18327 |
| vioscreen_fried_food_servings |
0.16068 |
| vioscreen_frt5_day |
0.5 |
| vioscreen_frtsumm |
0.7 |
| vioscreen_fructose |
5.896438891 |
| vioscreen_fruit_servings |
0.49863 |
| vioscreen_g_nwhl |
0.964520431 |
| vioscreen_g_total |
1.104356154 |
| vioscreen_g_whl |
0.139835608 |
| vioscreen_galactos |
0.071726033 |
| vioscreen_gammtoco |
7.596026862 |
| vioscreen_gender |
F |
| vioscreen_genistn |
0.215835655 |
| vioscreen_glac |
29.85394371 |
| vioscreen_gltc |
33.50942316 |
| vioscreen_glucose |
7.327890224 |
| vioscreen_glutamic |
8.397836178 |
| vioscreen_glycine |
2.125315042 |
| vioscreen_glycitn |
0.030684931 |
| vioscreen_grams |
1832.717123 |
| vioscreen_hei2010_dairy |
4.5 |
| vioscreen_hei2010_empty_calories |
12.8 |
| vioscreen_hei2010_fatty_acids |
3.4 |
| vioscreen_hei2010_fruit |
1.9 |
| vioscreen_hei2010_greens_beans |
5 |
| vioscreen_hei2010_protien_foods |
5 |
| vioscreen_hei2010_refined_grains |
10 |
| vioscreen_hei2010_score |
57.1 |
| vioscreen_hei2010_sea_foods_plant_protiens |
5 |
| vioscreen_hei2010_sodium |
0 |
| vioscreen_hei2010_veg |
5 |
| vioscreen_hei2010_whole_fruit |
3.7 |
| vioscreen_hei2010_whole_grains |
0.8 |
| vioscreen_hei_drk_g_org_veg_leg |
5 |
| vioscreen_hei_fruit |
1.9 |
| vioscreen_hei_grains |
1.5 |
| vioscreen_hei_meat_beans |
10 |
| vioscreen_hei_milk |
4.5 |
| vioscreen_hei_non_juice_frt |
3.7 |
| vioscreen_hei_oils |
10 |
| vioscreen_hei_sat_fat |
0 |
| vioscreen_hei_score |
50 |
| vioscreen_hei_sodium |
0 |
| vioscreen_hei_sol_fat_alc_add_sug |
8 |
| vioscreen_hei_veg |
5 |
| vioscreen_hei_whl_grains |
0.4 |
| vioscreen_height |
Not provided |
| vioscreen_histidin |
1.301287758 |
| vioscreen_inositol |
0.063315075 |
| vioscreen_iron |
6.54791845 |
| vioscreen_isoleuc |
2.110958904 |
| vioscreen_isomalt |
0 |
| vioscreen_joules |
5137.257192 |
| vioscreen_juice_servings |
0.00444 |
| vioscreen_lactitol |
0 |
| vioscreen_lactose |
3.599835456 |
| vioscreen_legumes |
0.094191784 |
| vioscreen_leucine |
3.546739887 |
| vioscreen_line_gi |
186.3907748 |
| vioscreen_low_fat_dairy_serving |
0.12625 |
| vioscreen_lutzeax |
3608.497603 |
| vioscreen_lycopene |
3107.870205 |
| vioscreen_lysine |
3.181534608 |
| vioscreen_m_egg |
0.523917797 |
| vioscreen_m_fish_hi |
0.01520548 |
| vioscreen_m_fish_lo |
0.156191776 |
| vioscreen_m_frank |
0.572520509 |
| vioscreen_m_meat |
1.075068476 |
| vioscreen_m_mpf |
2.626082245 |
| vioscreen_m_nutsd |
1.747369803 |
| vioscreen_m_organ |
0 |
| vioscreen_m_poult |
0.807123304 |
| vioscreen_m_soy |
0.009123287 |
| vioscreen_magnes |
194.5364512 |
| vioscreen_maltitol |
0 |
| vioscreen_maltose |
0.913041039 |
| vioscreen_mangan |
3.117726282 |
| vioscreen_mannitol |
0.225589052 |
| vioscreen_methhis3 |
9.266548052 |
| vioscreen_methion |
1.031123415 |
| vioscreen_mfa141 |
0.089452049 |
| vioscreen_mfa161 |
1.080082305 |
| vioscreen_mfa181 |
25.77296393 |
| vioscreen_mfa201 |
0.30430139 |
| vioscreen_mfa221 |
0.004438356 |
| vioscreen_mfatot |
27.43065871 |
| vioscreen_multi_calcium_avg |
200 |
| vioscreen_multi_calcium_dose |
200 |
| vioscreen_multivitamin |
Yes |
| vioscreen_multivitamin_freq |
7 |
| vioscreen_natoco |
8.391590192 |
| vioscreen_nccglbr |
57.78249144 |
| vioscreen_nccglgr |
40.42172785 |
| vioscreen_niacin |
11.60970008 |
| vioscreen_niacineq |
20.02306962 |
| vioscreen_nitrogen |
7.649341824 |
| vioscreen_non_fried_fish_servings |
0.10673 |
| vioscreen_nutrient_recommendation |
Default |
| vioscreen_omega3 |
1.027643742 |
| vioscreen_oxalic |
226.9046661 |
| vioscreen_oxalicm |
224.1131207 |
| vioscreen_pantothe |
2.605479619 |
| vioscreen_pectins |
2.550602492 |
| vioscreen_pfa182 |
11.46580827 |
| vioscreen_pfa183 |
0.966904063 |
| vioscreen_pfa184 |
0.001726027 |
| vioscreen_pfa204 |
0.098794514 |
| vioscreen_pfa205 |
0.013643834 |
| vioscreen_pfa225 |
0.012027397 |
| vioscreen_pfa226 |
0.033726029 |
| vioscreen_pfatot |
12.65216315 |
| vioscreen_phenylal |
2.062191814 |
| vioscreen_phosphor |
742.6333048 |
| vioscreen_phytic |
361.9585188 |
| vioscreen_pinitol |
0.002575342 |
| vioscreen_potass |
1747.575171 |
| vioscreen_procdate |
10/28/15 |
| vioscreen_proline |
2.704575463 |
| vioscreen_protanim |
30.53002729 |
| vioscreen_protein |
46.70123609 |
| vioscreen_protocol |
Knight Lab, University of Colorado Boulder |
| vioscreen_protveg |
16.17126231 |
| vioscreen_questionnaire |
Egg White Standard Questionnaire (V3) |
| vioscreen_recno |
592 |
| vioscreen_retinol |
237.6097817 |
| vioscreen_rgrain |
0.852109559 |
| vioscreen_ribofla |
0.96213705 |
| vioscreen_sacchar |
0 |
| vioscreen_salad_vegetable_servings |
0.99907 |
| vioscreen_satoco |
0.097643834 |
| vioscreen_selenium |
60.5882973 |
| vioscreen_serine |
2.234685025 |
| vioscreen_sfa100 |
0.556602792 |
| vioscreen_sfa120 |
0.7672329 |
| vioscreen_sfa140 |
2.275643795 |
| vioscreen_sfa160 |
12.85994488 |
| vioscreen_sfa170 |
0.131068504 |
| vioscreen_sfa180 |
5.669287778 |
| vioscreen_sfa200 |
0.208082183 |
| vioscreen_sfa220 |
0.293342444 |
| vioscreen_sfa40 |
0.646767102 |
| vioscreen_sfa60 |
0.370109621 |
| vioscreen_sfa80 |
0.261561647 |
| vioscreen_sfatot |
24.41115154 |
| vioscreen_sodium |
2588.894178 |
| vioscreen_sorbitol |
0.117452041 |
| vioscreen_srvid |
16981 |
| vioscreen_starch |
25.8461098 |
| vioscreen_started |
1/25/15 |
| vioscreen_subject_id |
Not provided |
| vioscreen_sucpoly |
0.042876711 |
| vioscreen_sucrlose |
0 |
| vioscreen_sucrose |
18.87596987 |
| vioscreen_sweet_servings |
0.64824 |
| vioscreen_tagatose |
1.334849318 |
| vioscreen_tfa161t |
0.057753424 |
| vioscreen_tfa181t |
1.439041096 |
| vioscreen_tfa182t |
0.281753436 |
| vioscreen_tgrain |
1.172027421 |
| vioscreen_thiamin |
0.659397073 |
| vioscreen_threonin |
1.825863188 |
| vioscreen_time |
30 |
| vioscreen_totaltfa |
1.802383715 |
| vioscreen_totcla |
0.147369855 |
| vioscreen_totfolat |
222.1514555 |
| vioscreen_totsugar |
36.84550781 |
| vioscreen_tryptoph |
0.505287777 |
| vioscreen_tyrosine |
1.625534267 |
| vioscreen_user_id |
16981 |
| vioscreen_v_drkgr |
0.410136978 |
| vioscreen_v_orange |
0.386219181 |
| vioscreen_v_other |
0.703616458 |
| vioscreen_v_potato |
0.152876721 |
| vioscreen_v_starcy |
0.133068492 |
| vioscreen_v_tomato |
0.183178084 |
| vioscreen_v_total |
1.969095977 |
| vioscreen_valine |
2.363534588 |
| vioscreen_veg5_day |
3 |
| vioscreen_vegetable_servings |
2 |
| vioscreen_vegsumm |
3.9 |
| vioscreen_visit |
1 |
| vioscreen_vita_iu |
13797.33014 |
| vioscreen_vita_rae |
887.8748288 |
| vioscreen_vita_re |
1538.138699 |
| vioscreen_vitb12 |
2.117780962 |
| vioscreen_vitb6 |
1.085123475 |
| vioscreen_vitc |
60.82551905 |
| vioscreen_vitd |
2.345233071 |
| vioscreen_vitd2 |
0.000383562 |
| vioscreen_vitd3 |
2.344904317 |
| vioscreen_vitd_iu |
93.80932283 |
| vioscreen_vite_iu |
12.62134391 |
| vioscreen_vitk |
165.7577697 |
| vioscreen_water |
1619.20137 |
| vioscreen_weight |
Not provided |
| vioscreen_wgrain |
0.319890417 |
| vioscreen_whole_grain_servings |
0.13984 |
| vioscreen_xylitol |
0.019671234 |
| vioscreen_zinc |
6.920739244 |
| vitamin_b_supplement_frequency |
Never |
| vitamin_d_supplement_frequency |
Never |
| vivid_dreams |
Not provided |
| weight_change |
Decreased more than 10 pounds |
| weight_kg |
70 |
| weight_units |
kilograms |
| whole_eggs |
Occasionally (1-2 times/week) |
| whole_grain_frequency |
Rarely (less than once/week) |