identifier
DRX023587
type
sra-experiment
sameAs
organism
title
10372-105G3.CNhs14618
library descriptor
1{
2  "LIBRARY_NAME": "CNhs14618",
3  "LIBRARY_STRATEGY": "OTHER",
4  "LIBRARY_SOURCE": "TRANSCRIPTOMIC",
5  "LIBRARY_SELECTION": "CAGE",
6  "LIBRARY_LAYOUT": {}
7}
platform
HELICOS
Helicos HeliScope
properties
1{
2  "alias": "DRX023587",
3  "center_name": "RIKEN_OSC",
4  "accession": "DRX023587",
5  "TITLE": "10372-105G3.CNhs14618",
6  "STUDY_REF": {
7    "refname": "DRP001031",
8    "refcenter": "RIKEN_OSC",
9    "accession": "DRP001031",
10    "IDENTIFIERS": {
11      "PRIMARY_ID": {
12        "label": "BioProject ID",
13        "content": "PRJDB1099"
14      }
15    }
16  },
17  "DESIGN": {
18    "DESIGN_DESCRIPTION": "",
19    "SAMPLE_DESCRIPTOR": {
20      "refname": "DRS017388",
21      "refcenter": "RIKEN_OSC",
22      "accession": "DRS017388",
23      "IDENTIFIERS": {
24        "PRIMARY_ID": {
25          "label": "BioSample ID",
26          "content": "SAMD00021181"
27        }
28      }
29    },
30    "LIBRARY_DESCRIPTOR": {
31      "LIBRARY_NAME": "CNhs14618",
32      "LIBRARY_STRATEGY": "OTHER",
33      "LIBRARY_SOURCE": "TRANSCRIPTOMIC",
34      "LIBRARY_SELECTION": "CAGE",
35      "LIBRARY_LAYOUT": {}
36    },
37    "SPOT_DESCRIPTOR": {
38      "SPOT_DECODE_SPEC": {
39        "SPOT_LENGTH": "33",
40        "READ_SPEC": [
41          {
42            "READ_INDEX": "0",
43            "READ_CLASS": "Application Read",
44            "READ_TYPE": "Forward",
45            "BASE_COORD": "1"
46          }
47        ]
48      }
49    }
50  },
51  "PLATFORM": {
52    "HELICOS": {
53      "INSTRUMENT_MODEL": "Helicos HeliScope"
54    }
55  },
56  "PROCESSING": {
57    "PIPELINE": {
58      "PIPE_SECTION": [
59        {
60          "STEP_INDEX": "1",
61          "PREV_STEP_INDEX": [
62            "NIL"
63          ],
64          "PROGRAM": "",
65          "VERSION": ""
66        }
67      ]
68    }
69  },
70  "EXPERIMENT_ATTRIBUTES": {
71    "EXPERIMENT_ATTRIBUTE": [
72      {
73        "TAG": "library_protocol",
74        "VALUE": "OP-HELISCOPE-CAGE-v4.0"
75      },
76      {
77        "TAG": "sequence_protocol",
78        "VALUE": "OP-HELISCOPE-sequencing-v1.0"
79      }
80    ]
81  }
82}
dbXref
bioproject
PRJDB1099
biosample
SAMD00021181
sra-run
DRR025982
sra-sample
DRS017388
sra-study
DRP001031
sra-submission
DRA002747
download
DRA002747.experiment.xml

HTTPSFTP

status
public
visibility
unrestricted-access
dateCreated
2015-02-13T01:55:49+09:00
dateModified
2017-06-14T23:02:53+09:00
datePublished
2017-06-14T23:02:53+09:00
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