| identifier |
DRS071592 |
| type |
sra-sample |
| sameAs |
|
| organism |
Rattus norvegicus
|
| attributes |
| strain |
Wistar |
| description |
This BioSample is a pool of the BioSample SAMD00109635 to SAMD00109656. It was created for the purpose of providing raw (non-demultiplexed) sequence files related to these samples, to allow for recovering unique molecular identifier sequences, which are lost during the process of de-multiplexing and data deposition. The first 6 bases in READ1 are a barcode, identifying BioSamples as follows. ACATGA: SAMD00109651 (LTD_1h_9P); AGTAGC: SAMD00109644 (ctrl_1h_1P); ATCATA: SAMD00109653 (LTD_amanitin_10P); ATCGCA: SAMD00109645 (ctrl_1h_2P); ATCGTG: SAMD00109640 (Amanitin_1h_6Sn); CACGAT: SAMD00109648 (LTD_1h_7Sn); CACGTG: SAMD00109655 (LTD_amanitin_11P); CACTCT: SAMD00109646 (ctrl_1h_3P); CACTGA: SAMD00109650 (LTD_1h_8Sn); CGATGA: SAMD00109641 (control_1h_1Sn); CTGAGC: SAMD00109635 (Amanitin_1h_4P); GAGATA: SAMD00109642 (control_1h_2Sn); GAGCGT: SAMD00109637 (Amanitin_1h_5P); GAGTGA: SAMD00109652 (LTD_1h_9Sn); GCTCTC: SAMD00109643 (control_1h_3Sn); GCTGCA: SAMD00109639 (Amanitin_1h_6P); GTATAC: SAMD00109654 (LTD_amanitin_10Sn); GTATGA: SAMD00109636 (Amanitin_1h_4Sn); TATAGC: SAMD00109647 (LTD_1h_7P); TCGAGC: SAMD00109656 (LTD_amanitin_11Sn); TCGATA: SAMD00109638 (Amanitin_1h_5Sn); TCGCGT: SAMD00109649 (LTD_1h_8P). The barcodes are followed 8 random bases (unique molecular identifier) and a TATAGGG linker. |
| bioproject_id |
PRJDB6662 |
| sample_title |
Pooled samples extracted from rat cerebellar slices, with or without pharmacological treatments or RNA enrichments. |
| tissue_type |
cerebellum |
| sample_name |
Pooled cerebellar samples |
|
| properties ▽ |
{...}
|
| dbXrefs |
|
| distribution |
JSONJSON-LD
|
| Download |
|
| status |
public |
| visibility |
unrestricted-access |
| dateCreated |
2018-05-28T06:56:50+09:00 |
| dateModified |
2018-07-23T22:42:49+09:00 |
| datePublished |
2018-07-23T22:42:49+09:00 |