home > sra-sample > ERS039465
identifier ERS039465
type sra-sample
sameAs
biosample  SAMEA1684150
organism ecological metagenomes
attributes
ENA first public  2012-12-31
ENA last update  2018-03-09
ENA-KEYWORD  GSC, MIxS, MIMARKS
External Id  SAMEA1684150
GSC:MIMARKS:v2.1  Compliant
Geographic location (country:region,area)  Finland, Southern Finland
INSDC center alias  UH-FS
INSDC center name  Forest pathology lab, Department of Forest Sciences, University of Helsinki, Finland
INSDC first public  2012-12-31T17:01:33Z
INSDC last update  2018-03-09T09:53:43Z
INSDC status  public
Submitter Id  CS2
amount or size of sample collected  5 - 10
chemical administration  none (control)
collection date  40313
depth  0.0-0.02
elevation  0
enviornmental package  miscellaneous natural or artificial environment
environment (biome)  forest
environment (feature)  wood
environment (material)  wood stump in forest
experimental factor  time
geographic location (latitudeandlongitude)  60 N 28 E
investigation type  MIMARKS_Survey
miscellaneous parameter  Tree species of stump:Norway Spruce
miscellaneous parameter  Time elapsed since felling: 13 years
nucleic acid extraction  Genomic DNA was extracted from 500 mg of the homogenized wood sample using the 'PowerSoilTM DNA Isolation Kit' (MoBio Laboratories, Carlsbad, CA, USA).
plant body site  stem base (dead tree stump)
project name  Pg effect
sample collection device or method  five 1x1x2 cm cores, pooled
sample name  CS2
sample weight for DNA extraction  0.5
sequencing method  Pyrosequencing
sequencing method  pyrosequencing
target gene  16S rRNA
target subfragment  V1-V3 regions
properties 
{...}
dbXrefs
bioproject  PRJEB2586
sra-run  ERR037279
sra-submission  ERA036727
biosample  SAMEA1684150
sra-study  ERP000742
sra-experiment  ERX014821
distribution JSONJSON-LD
Download
ERA036727.sample.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2013-01-01T01:42:22Z
dateModified 2021-09-04T14:27:25Z
datePublished 2013-01-03T15:23:18Z