| attributes |
| ENA first public |
2016-09-29 |
| ENA last update |
2016-10-21 |
| External Id |
SAMEA3883523 |
| INSDC center alias |
MPIEVB |
| INSDC center name |
Max-Planck-Institute for Evolutionary Biology |
| INSDC first public |
2016-09-29T17:01:44Z |
| INSDC last update |
2016-10-21T09:40:08Z |
| INSDC status |
public |
| Submitter Id |
5_1_RNA |
| adapters |
R1-TATGGTAATTGTAGAGTTTGATCCTGGCTCAG;R2-AGTCAGTCAGCCTGCTGCCTCCCGTAGGAGT |
| barrier access |
restricted |
| bedding treatment |
autoclave |
| chow provider |
Altromin |
| chow treatment |
untreated |
| collection date |
2014-09-29 |
| common name |
house mouse |
| environment (biome) |
host associated |
| environment (feature) |
feces |
| environment (material) |
feces |
| facility |
E |
| geographic location (country and/or sea) |
Germany |
| geographic location (latitude) |
49�35'52.3N |
| geographic location (longitude) |
11�00'15.3E |
| host age |
112 |
| host body habitat |
colon |
| host body product |
feces |
| host common name |
house mouse |
| host diet |
Altromin |
| host disease status |
healthy |
| host life stage |
adult |
| host sex |
male |
| host subject id |
5_1 |
| host taxid |
10090 |
| host total mass |
29,2 |
| host-associated environmental package |
host-associated |
| housing condition |
IVC |
| investigation type |
metagenome |
| medication |
no medication |
| mouse provider |
Charles River |
| multiplex identifiers |
R1-TTCCGGTT;R2-AGAGTGTG |
| nucleic acid extraction |
Qiagen AllPrep DNA/RNA |
| pcr conditions |
98�C-30s, 30 � [98�C-9s, 55�C-60s, 72�C-90s], 72�C-10 min |
| pcr primers |
27F-338R |
| presence of other strains |
1 |
| project name |
Variation in C57BL/6J mouse microbiota |
| sample name |
5_1_RNA |
| sequence type |
RNA |
| sequencing method |
Illumina Miseq |
| source material identifiers |
fecal sample |
| target gene |
16S rRNA |
| water treatment |
autoclave |
|