attributes |
ENA first public |
2016-09-29 |
ENA last update |
2016-10-21 |
External Id |
SAMEA3883541 |
INSDC center alias |
MPIEVB |
INSDC center name |
Max-Planck-Institute for Evolutionary Biology |
INSDC first public |
2016-09-29T17:01:46Z |
INSDC last update |
2016-10-21T09:40:16Z |
INSDC status |
public |
Submitter Id |
6_5_RNA |
adapters |
R1-TATGGTAATTGTAGAGTTTGATCCTGGCTCAG;R2-AGTCAGTCAGCCTGCTGCCTCCCGTAGGAGT |
barrier access |
open |
bedding treatment |
autoclave |
chow provider |
Ssniff |
chow treatment |
autoclave |
collection date |
2014-11-05 |
common name |
house mouse |
environment (biome) |
host associated |
environment (feature) |
feces |
environment (material) |
feces |
facility |
E |
geographic location (country and/or sea) |
Germany |
geographic location (latitude) |
49�35'52.3N |
geographic location (longitude) |
11�00'15.3E |
host age |
88 |
host body habitat |
colon |
host body product |
feces |
host common name |
house mouse |
host diet |
Ssniff |
host disease status |
healthy |
host life stage |
adult |
host sex |
male |
host subject id |
6_5 |
host taxid |
10090 |
host total mass |
26 |
host-associated environmental package |
host-associated |
housing condition |
IVC |
investigation type |
metagenome |
medication |
no medication |
mouse provider |
Janvier |
multiplex identifiers |
R1-AGAGGTGT;R2-AGAGTGTG |
nucleic acid extraction |
Qiagen AllPrep DNA/RNA |
pcr conditions |
98�C-30s, 30 � [98�C-9s, 55�C-60s, 72�C-90s], 72�C-10 min |
pcr primers |
27F-338R |
presence of other strains |
1 |
project name |
Variation in C57BL/6J mouse microbiota |
sample name |
6_5_RNA |
sequence type |
RNA |
sequencing method |
Illumina Miseq |
source material identifiers |
fecal sample |
target gene |
16S rRNA |
water treatment |
autoclave |
|