attributes |
DNA extraction date |
2014-03-20 |
ENA first public |
2017-02-28 |
ENA last update |
2016-10-21 |
External Id |
SAMEA3891294 |
INSDC center alias |
UH/IB |
INSDC center name |
Institute of Biotechnology, University of Helsinki |
INSDC first public |
2017-02-28T17:03:35Z |
INSDC last update |
2016-10-21T09:38:37Z |
INSDC status |
public |
Submitter Id |
nn4 |
birth weight |
620 |
blood culture |
Coagulase negative Staphylococci; Staphylococcus epidermidis |
collection date |
2013-07-17 |
crp |
72 |
environment (biome) |
human-associated habitat |
environment (feature) |
incubator |
environment (material) |
incubator |
geographic location (country and/or sea) |
Finland |
geographic location (latitude) |
60.187055 |
geographic location (longitude) |
24.909969 |
gestational week |
24 |
host disease status |
Intestinal perforation; Disseminated Intravascular Coagulation |
host family relationship |
no |
host subject id |
S1 |
human skin environmental package |
human-skin |
investigation type |
metagenome |
leucocyte count |
12.2 |
mode of birth |
Cesarean section |
pcr primers |
forward: AGAGTTTGATCMTGGCTCAG, reverse: GTATTACCGCGGCTGCTG |
primary antibiotics |
1to5 |
project name |
VLBW Neonate Microbiome |
sample collection device or method |
swab |
sample name |
nn4 |
sampling day |
68 |
secondary antibiotics |
1to35 |
sepsis diagnosed |
1 |
sequencing method |
Illumina MiSeq |
sequencing run |
Run0 |
target gene |
16S |
target subfragment |
V1-V3 |
|