| attributes |
| DNA extraction date |
2014-03-27 |
| ENA first public |
2017-02-28 |
| ENA last update |
2016-10-21 |
| External Id |
SAMEA3891337 |
| INSDC center alias |
UH/IB |
| INSDC center name |
Institute of Biotechnology, University of Helsinki |
| INSDC first public |
2017-02-28T17:03:35Z |
| INSDC last update |
2016-10-21T09:38:36Z |
| INSDC status |
public |
| Submitter Id |
nn47 |
| birth weight |
575 |
| blood culture |
Coagulase negative Staphylococci; Staphylococcus epidermidis |
| collection date |
2013-09-25 |
| environment (biome) |
human-associated habitat |
| environment (feature) |
skin |
| environment (material) |
skin |
| geographic location (country and/or sea) |
Finland |
| geographic location (latitude) |
60.187055 |
| geographic location (longitude) |
24.909969 |
| gestational week |
26 |
| host disease status |
Respiratory Distress Syndrome; Bronchopulmonary Dysplasia |
| host family relationship |
no |
| host subject id |
S2 |
| human skin environmental package |
human-skin |
| investigation type |
metagenome |
| mode of birth |
Cesarean section |
| pcr primers |
forward: AGAGTTTGATCMTGGCTCAG, reverse: GTATTACCGCGGCTGCTG |
| primary antibiotics |
1to5 |
| project name |
VLBW Neonate Microbiome |
| sample collection device or method |
swab |
| sample name |
nn47 |
| sampling day |
37 |
| secondary antibiotics |
15to22 |
| sepsis diagnosed |
15 |
| sequencing method |
Illumina MiSeq |
| sequencing run |
Run3 |
| target gene |
16S |
| target subfragment |
V1-V3 |
|