home > sra-sample > ERS1247151
identifier ERS1247151
type sra-sample
sameAs
biosample　 SAMEA4076041
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
External Id　 SAMEA4076041
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:14:56Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E1A06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned　 brood phase
altitude　 0
anonymized name　 E1A06
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 1.150261992
area　 Zona amigo
assigned_from_geo　 true
backup　 false
bird_family　 Upuidae
bird_order　 Upupiformes
broken_eggs　 0
brood_size　 5
clutch_size　 6
code_id_statistica　 33
coll_date_juliane_days　 103
collection date　 4/14/07 0:00
collection_timestamp　 4/14/07
comments_in_spanish　 Abandonados
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 4/14/07
depth　 0
dna_extracted　 true
elevation　 929
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 75.21928331
enterococcus_density　 4.880359853
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 751.2
estefania_plates　 1A06
extracted DNA avail now　 true
feathers　 false
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 4/15/07
hatching_success　 0.833333333
hatching_synchrony　 asyn
host common name　 Eurasian hoopoe
host scientific name　 Upupiformes
host subject id　 Abubilla.754.2
host taxid　 57439
latitude　 37.32196944
lay_date_juliane_days　 81
laying_date　 6/21/07
log_enterobacteriaceae_density　 1.882064861
log_enterococcus_density　 0.769403904
log_mesophiles_density　 6.349990108
log_rel_growth_enterobact　 0.050440861
log_rel_growth_enterococcus　 -1.122747591
log_rel_growth_mesophiles　 -1.301029811
log_rel_growth_staphylococcus　 0.331100856
log_staphylococcus_density　 1.533165597
longitude　 -3.131269444
mesophiles_density　 2238669.146
nest_type　 hole
number_fledging　 Missing: Not provided
number_sampled_eggs　 6
observer　 Juanma/Manolo
physical_location_1　 U Granada
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 false
platero_plates　 P1D07
predated　 No
public　 true
rel_growth_enterobacteriaceae　 0.123158015
rel_growth_enterococcus　 -0.924620646
rel_growth_staphylococcus　 1.143388302
relative_growth_mesophiles　 -0.949999979
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E1A06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Abubilla.754.2
sample_progress　 sequenced (16S)
sampling time　 2
sampling_code_id　 46
species name　 Upupa epops
staphylococcus_density　 33.13230336
storing_days　 0
unhatched_eggs　 1
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1529715
sra-submission　 ERA674159
biosample　 SAMEA4076041
sra-study　 ERP016455
sra-experiment　 ERX1600607
distribution JSONJSON-LD
Download
ERA674159.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T15:48:14Z
dateModified 2021-09-24T10:00:14Z
datePublished 2016-07-14T16:21:15Z