home > sra-sample > ERS1247207
identifier ERS1247207
type sra-sample
sameAs
biosample　 SAMEA4076097
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
External Id　 SAMEA4076097
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:14:58Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E1F02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned　 brood phase
altitude　 0
anonymized name　 E1F02
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 1.150261992
area　 Zona amigo
assigned_from_geo　 true
backup　 false
bird_family　 Upuidae
bird_order　 Upupiformes
broken_eggs　 0
brood_size　 5
clutch_size　 6
code_id_statistica　 32
coll_date_juliane_days　 98
collection date　 4/9/07 0:00
collection_timestamp　 4/9/07
comments_in_spanish　 Abandonados
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 4/11/07
depth　 0
dna_extracted　 true
elevation　 929
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 66.86158516
enterococcus_density　 77.01021862
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 754.1
estefania_plates　 1F02
extracted DNA avail now　 true
feathers　 false
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 4/15/07
hatching_success　 0.833333333
hatching_synchrony　 asyn
host common name　 Eurasian hoopoe
host scientific name　 Upupiformes
host subject id　 Abubilla.754.1
host taxid　 57439
latitude　 37.32196944
lay_date_juliane_days　 81
laying_date　 6/21/07
log_enterobacteriaceae_density　 1.831624
log_enterococcus_density　 1.892151495
log_mesophiles_density　 7.651019919
log_rel_growth_enterobact　 0.050440861
log_rel_growth_enterococcus　 -1.122747591
log_rel_growth_mesophiles　 -1.301029811
log_rel_growth_staphylococcus　 0.331100856
log_staphylococcus_density　 1.202064741
longitude　 -3.131269444
mesophiles_density　 4.477338292E7
nest_type　 hole
number_fledging　 Missing: Not provided
number_sampled_eggs　 6
observer　 Juanma/Manolo
physical_location_1　 U Granada
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 false
platero_plates　 P1B05
predated　 No
public　 true
rel_growth_enterobacteriaceae　 0.123158015
rel_growth_enterococcus　 -0.924620646
rel_growth_staphylococcus　 1.143388302
relative_growth_mesophiles　 -0.949999979
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E1F02.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Abubilla.754.1
sample_progress　 sequenced (16S)
sampling time　 1
sampling_code_id　 18
species name　 Upupa epops
staphylococcus_density　 14.92446097
storing_days　 2
unhatched_eggs　 1
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1529771
sra-submission　 ERA674159
biosample　 SAMEA4076097
sra-study　 ERP016455
sra-experiment　 ERX1600663
distribution JSONJSON-LD
Download
ERA674159.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T15:48:26Z
dateModified 2021-09-24T10:00:29Z
datePublished 2016-07-14T16:22:13Z