home > sra-sample > ERS1247239
identifier ERS1247239
type sra-sample
sameAs
biosample　 SAMEA4076129
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
External Id　 SAMEA4076129
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:14:59Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E1H08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
altitude　 0
anonymized name　 E1H08
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 0.955316618
area　 Granada
assigned_from_geo　 true
backup　 false
bird_family　 Turdidae
bird_order　 Passeriformes
broken_eggs　 0
brood_size　 2
clutch_size　 3
code_id_statistica　 371
coll_date_juliane_days　 Missing: Not collected
collection date　 4/16/07 0:00
collection_timestamp　 4/16/07
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 4/19/07
depth　 0
dna_extracted　 true
elevation　 680
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 2.337964268
enterococcus_density　 0
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 46.1
estefania_plates　 1H08
extracted DNA avail now　 true
feathers　 false
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 4/28/07
hatching_success　 0.666666667
hatching_synchrony　 asyn
host common name　 Blackbird
host scientific name　 Passeriformes
host subject id　 Mirlo.46.1
host taxid　 9187
latitude　 37.17907778
lay_date_juliane_days　 Missing: Not provided
laying_date　 Missing: Not provided
log_enterobacteriaceae_density　 0.523481683
log_enterococcus_density　 0
log_mesophiles_density　 5.891717172
log_rel_growth_enterobact　 4.271331884
log_rel_growth_enterococcus　 0.305705501
log_rel_growth_mesophiles　 0.778150786
log_rel_growth_staphylococcus　 0.523481683
log_staphylococcus_density　 0
longitude　 -3.611505556
mesophiles_density　 779321.4228
nest_type　 open
number_fledging　 Missing: Not provided
number_sampled_eggs　 3
observer　 Juandiego
physical_location_1　 U Granada
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 true
platero_plates　 P1E9
public　 true
rel_growth_enterobacteriaceae　 18677.06508
rel_growth_enterococcus　 1.021647817
rel_growth_staphylococcus　 2.337964268
relative_growth_mesophiles　 4.999993584
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E1H08.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Mirlo.46.1
sample_progress　 sequenced (16S)
sampling time　 1
sampling_code_id　 72
species name　 Turdus merula
staphylococcus_density　 0
storing_days　 3
unhatched_eggs　 1
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1529803
sra-submission　 ERA674159
biosample　 SAMEA4076129
sra-study　 ERP016455
sra-experiment　 ERX1600695
distribution JSONJSON-LD
Download
ERA674159.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T15:48:33Z
dateModified 2021-09-24T10:04:00Z
datePublished 2016-07-14T16:22:14Z