| ENA first public |
2016-07-13 |
| ENA last update |
2016-07-13 |
| External Id |
SAMEA4076200 |
| INSDC center alias |
UCSDMI |
| INSDC center name |
University of California San Diego Microbiome Initiative |
| INSDC first public |
2016-07-13T17:01:27Z |
| INSDC last update |
2016-07-13T01:15:01Z |
| INSDC status |
public |
| Submitter Id |
qiita_sid_1632:1632.E2E12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences |
| abandoned |
No |
| altitude |
0 |
| anonymized name |
E2E12 |
| arcsine_fledge_success_brood |
Missing: Not collected |
| arcsine_fledge_success_clutch |
Missing: Not collected |
| arcsine_hatching_success |
Missing: Not collected |
| area |
Zona Miki |
| assigned_from_geo |
true |
| backup |
false |
| bird_family |
Upuidae |
| bird_order |
Upupiformes |
| broken_eggs |
Missing: Not collected |
| brood_size |
Missing: Not collected |
| clutch_size |
6 |
| code_id_statistica |
37 |
| coll_date_juliane_days |
119 |
| collection date |
4/30/07 0:00 |
| collection_timestamp |
4/30/07 |
| comments_in_spanish |
Depredado; 1 pollo+4 huevos |
| common name |
organismal metagenome |
| country |
GAZ:Spain |
| country_nation |
Spain |
| country_region |
Hoya de Guadix |
| culturing_date |
5/5/07 |
| depth |
0 |
| dna_extracted |
true |
| elevation |
923 |
| empo_0 |
EMP sample |
| empo_1 |
Host-associated |
| empo_2 |
Animal |
| empo_3 |
Animal surface |
| enterobacteriaceae_density |
5.791689217E8 |
| enterococcus_density |
10632.94738 |
| env biome |
mediterranean shrubland biome |
| env feature |
nest of bird |
| env matter |
egg |
| env package |
host-associated |
| eppendorf_name |
792 (30/04) |
| estefania_plates |
2.0E12 |
| extracted DNA avail now |
true |
| feathers |
false |
| fledge_success_brood |
Missing: Not collected |
| fledge_success_clutch |
Missing: Not collected |
| fledging_date |
Missing: Not collected |
| geo loc name |
Spain:Hoya de Guadix |
| hatching_date |
5/7/07 |
| hatching_success |
Missing: Not collected |
| hatching_synchrony |
asyn |
| host common name |
Eurasian hoopoe |
| host scientific name |
Upupiformes |
| host subject id |
Abubilla.792.1 |
| host taxid |
57439 |
| latitude |
37.32240556 |
| lay_date_juliane_days |
104 |
| laying_date |
7/14/07 |
| log_enterobacteriaceae_density |
8.76280525 |
| log_enterococcus_density |
4.026694507 |
| log_mesophiles_density |
7.498076517 |
| log_rel_growth_enterobact |
-1.899099446 |
| log_rel_growth_enterococcus |
1.291178349 |
| log_rel_growth_mesophiles |
-0.593942061 |
| log_rel_growth_staphylococcus |
-1.046515819 |
| log_staphylococcus_density |
1.323214033 |
| longitude |
-3.128919444 |
| mesophiles_density |
3.148302856E7 |
| nest_type |
hole |
| number_fledging |
Missing: Not provided |
| number_sampled_eggs |
5 |
| observer |
Manolo |
| physical_location_1 |
U Granada |
| physical_specimen_location |
CCME |
| physical_specimen_remaining |
true |
| plants |
false |
| platero_plates |
P2F010 |
| predated |
brood phase |
| public |
true |
| rel_growth_enterobacteriaceae |
-0.987384614 |
| rel_growth_enterococcus |
18.55142196 |
| rel_growth_staphylococcus |
-0.910157013 |
| relative_growth_mesophiles |
-0.745282995 |
| required_sample_info_status |
completed |
| sample name |
qiita_sid_1632:1632.E2E12.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences |
| sample type |
bird egg shell |
| sample_nest |
Abubilla.792.1 |
| sample_progress |
sequenced (16S) |
| sampling time |
1 |
| sampling_code_id |
201 |
| species name |
Upupa epops |
| staphylococcus_density |
20.04815498 |
| storing_days |
5 |
| unhatched_eggs |
Missing: Not provided |
| year |
2007 |