home > sra-sample > ERS1247372
identifier ERS1247372
type sra-sample
sameAs
biosample　 SAMEA4076262
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
External Id　 SAMEA4076262
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:15:03Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E3B09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned　 No
altitude　 0
anonymized name　 E3B09
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 1.209429203
area　 Hernan-Valle
assigned_from_geo　 true
backup　 false
bird_family　 Upuidae
bird_order　 Upupiformes
broken_eggs　 0
brood_size　 7
clutch_size　 8
code_id_statistica　 34
coll_date_juliane_days　 126
collection date　 5/7/07 0:00
collection_timestamp　 5/7/07
comments_in_spanish　 Depredado
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 5/12/07
depth　 0
dna_extracted　 true
elevation　 1134
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 1.369957257E7
enterococcus_density　 22275.72776
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 778
estefania_plates　 3B09
extracted DNA avail now　 true
feathers　 false
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 5/17/07
hatching_success　 0.875
hatching_synchrony　 asyn
host common name　 Eurasian hoopoe
host scientific name　 Upupiformes
host subject id　 Abubilla.778.1
host taxid　 57439
latitude　 37.37229722
lay_date_juliane_days　 111
laying_date　 7/21/07
log_enterobacteriaceae_density　 7.136707049
log_enterococcus_density　 4.347851397
log_mesophiles_density　 7.114987801
log_rel_growth_enterobact　 -1.1356622
log_rel_growth_enterococcus　 -0.573904566
log_rel_growth_mesophiles　 -0.745966415
log_rel_growth_staphylococcus　 1.164001528
log_staphylococcus_density　 0
longitude　 -3.066655556
mesophiles_density　 1.303130074E7
nest_type　 hole
number_fledging　 Missing: Not provided
number_sampled_eggs　 8
observer　 Manolo
physical_location_1　 U Granada
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 false
platero_plates　 P3B09
predated　 brood phase
public　 true
rel_growth_enterobacteriaceae　 -0.926829201
rel_growth_enterococcus　 -0.733255524
rel_growth_staphylococcus　 13.58819393
relative_growth_mesophiles　 -0.820512758
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E3B09.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Abubilla.778.1
sample_progress　 sequenced (16S)
sampling time　 1
sampling_code_id　 290
species name　 Upupa epops
staphylococcus_density　 0
storing_days　 5
unhatched_eggs　 1
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1529936
sra-submission　 ERA674159
biosample　 SAMEA4076262
sra-study　 ERP016455
sra-experiment　 ERX1600828
distribution JSONJSON-LD
Download
ERA674159.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T15:48:59Z
dateModified 2021-09-24T10:04:42Z
datePublished 2016-07-14T16:22:14Z