home > sra-sample > ERS1247407
identifier ERS1247407
type sra-sample
sameAs
biosample　 SAMEA4076297
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
External Id　 SAMEA4076297
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:15:04Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E3D11.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned　 No
altitude　 0
anonymized name　 E3D11
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 Missing: Not collected
area　 Charches
assigned_from_geo　 true
backup　 false
bird_family　 Laniidae
bird_order　 Passeriformes
broken_eggs　 Missing: Not collected
brood_size　 Missing: Not collected
clutch_size　 5
code_id_statistica　 63
coll_date_juliane_days　 131
collection date　 5/12/07 0:00
collection_timestamp　 5/12/07
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 5/14/07
depth　 0
dna_extracted　 true
elevation　 1310
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 1740601.337
enterococcus_density　 1.013186374
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 HLCA4.2
estefania_plates　 3D11
extracted DNA avail now　 true
feathers　 true
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 5/14/07
hatching_success　 Missing: Not collected
hatching_synchrony　 asyn
host common name　 Southern grey shrike
host scientific name　 Passeriformes
host subject id　 Alcaudon.Alcaudon4.2
host taxid　 219215
latitude　 37.28454722
lay_date_juliane_days　 111
laying_date　 7/21/07
log_enterobacteriaceae_density　 6.240699562
log_enterococcus_density　 0.303883982
log_mesophiles_density　 6.614280081
log_rel_growth_enterobact　 -0.259637198
log_rel_growth_enterococcus　 -0.742499377
log_rel_growth_mesophiles　 -0.539269086
log_rel_growth_staphylococcus　 0
log_staphylococcus_density　 0
longitude　 -2.985819444
mesophiles_density　 4114148.615
nest_type　 open
number_fledging　 Missing: Not provided
number_sampled_eggs　 5
observer　 Juan
physical_location_1　 U Granada
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 true
platero_plates　 P3D03
predated　 No
public　 true
rel_growth_enterobacteriaceae　 -0.449999858
rel_growth_enterococcus　 -0.819074149
rel_growth_staphylococcus　 0
relative_growth_mesophiles　 -0.711111061
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E3D11.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Alcaudon.Alcaudon4.2
sample_progress　 sequenced (16S)
sampling time　 2
sampling_code_id　 316
species name　 Lanius meridionalis
staphylococcus_density　 0
storing_days　 2
unhatched_eggs　 Missing: Not provided
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1529971
sra-submission　 ERA674159
biosample　 SAMEA4076297
sra-study　 ERP016455
sra-experiment　 ERX1600863
distribution JSONJSON-LD
Download
ERA674159.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T15:49:06Z
dateModified 2021-09-24T10:04:51Z
datePublished 2016-07-14T16:22:15Z