home > sra-sample > ERS1247430
identifier ERS1247430
type sra-sample
sameAs
biosample　 SAMEA4076320
organism bird metagenome
attributes
ENA first public　 2016-07-13
ENA last update　 2016-07-13
External Id　 SAMEA4076320
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-13T17:01:27Z
INSDC last update　 2016-07-13T01:15:05Z
INSDC status　 public
Submitter Id　 qiita_sid_1632:1632.E3F06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
abandoned　 No
altitude　 0
anonymized name　 E3F06
arcsine_fledge_success_brood　 Missing: Not collected
arcsine_fledge_success_clutch　 Missing: Not collected
arcsine_hatching_success　 1.107148718
area　 Hernan-Valle
assigned_from_geo　 true
backup　 false
bird_family　 Paridae
bird_order　 Passeriformes
broken_eggs　 0
brood_size　 8
clutch_size　 10
code_id_statistica　 124
coll_date_juliane_days　 130
collection date　 5/11/07 0:00
collection_timestamp　 5/11/07
comments_in_spanish　 Depredado
common name　 organismal metagenome
country　 GAZ:Spain
country_nation　 Spain
country_region　 Hoya de Guadix
culturing_date　 5/12/07
depth　 0
dna_extracted　 true
elevation　 1134
empo_0　 EMP sample
empo_1　 Host-associated
empo_2　 Animal
empo_3　 Animal surface
enterobacteriaceae_density　 8898953.304
enterococcus_density　 279182.8488
env biome　 mediterranean shrubland biome
env feature　 nest of bird
env matter　 egg
env package　 host-associated
eppendorf_name　 CA32.1
estefania_plates　 3F06
extracted DNA avail now　 true
feathers　 true
fledge_success_brood　 Missing: Not collected
fledge_success_clutch　 Missing: Not collected
fledging_date　 Missing: Not collected
geo loc name　 Spain:Hoya de Guadix
hatching_date　 5/19/07
hatching_success　 0.8
hatching_synchrony　 asyn
host common name　 Great tit
host scientific name　 Passeriformes
host subject id　 Carbonero.CA38.1
host taxid　 9157
latitude　 37.37229722
lay_date_juliane_days　 124
laying_date　 8/3/07
log_enterobacteriaceae_density　 6.949338977
log_enterococcus_density　 5.44589029
log_mesophiles_density　 7.047948765
log_rel_growth_enterobact　 -1.603764544
log_rel_growth_enterococcus　 -4.683917291
log_rel_growth_mesophiles　 -0.4839606
log_rel_growth_staphylococcus　 -0.069849057
log_staphylococcus_density　 0.069849057
longitude　 -3.066655556
mesophiles_density　 1.116731395E7
nest_type　 hole
number_fledging　 Missing: Not provided
number_sampled_eggs　 10
observer　 Juanma
physical_location_1　 U Granada
physical_specimen_location　 CCME
physical_specimen_remaining　 true
plants　 false
platero_plates　 P3A01
predated　 brood phase
public　 true
rel_growth_enterobacteriaceae　 -0.97509793
rel_growth_enterococcus　 -0.999979295
rel_growth_staphylococcus　 -0.14856609
relative_growth_mesophiles　 -0.67187494
required_sample_info_status　 completed
sample name　 qiita_sid_1632:1632.E3F06.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences
sample type　 bird egg shell
sample_nest　 Carbonero.CA38.1
sample_progress　 sequenced (16S)
sampling time　 1
sampling_code_id　 281
species name　 Parus major
staphylococcus_density　 0.17448928
storing_days　 1
unhatched_eggs　 2
year　 2007
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14786
sra-run　 ERR1529994
sra-submission　 ERA674159
biosample　 SAMEA4076320
sra-study　 ERP016455
sra-experiment　 ERX1600886
distribution JSONJSON-LD
Download
ERA674159.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-14T15:49:11Z
dateModified 2021-09-24T10:04:57Z
datePublished 2016-07-14T16:23:14Z