| ENA first public |
2016-07-13 |
| ENA last update |
2016-07-13 |
| External Id |
SAMEA4076550 |
| INSDC center alias |
UCSDMI |
| INSDC center name |
University of California San Diego Microbiome Initiative |
| INSDC first public |
2016-07-13T17:01:27Z |
| INSDC last update |
2016-07-13T01:15:12Z |
| INSDC status |
public |
| Submitter Id |
qiita_sid_1632:1632.E5G10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences |
| abandoned |
No |
| altitude |
0 |
| anonymized name |
E5G10 |
| arcsine_fledge_success_brood |
Missing: Not collected |
| arcsine_fledge_success_clutch |
Missing: Not collected |
| arcsine_hatching_success |
Missing: Not collected |
| area |
Calahorra |
| assigned_from_geo |
true |
| backup |
true |
| bird_family |
Passeridae |
| bird_order |
Passeriformes |
| broken_eggs |
Missing: Not collected |
| brood_size |
Missing: Not collected |
| clutch_size |
6 |
| code_id_statistica |
330 |
| coll_date_juliane_days |
150 |
| collection date |
5/31/07 0:00 |
| collection_timestamp |
5/31/07 |
| comments_in_spanish |
Sin datos de los pollos ni de la eclosion; 4 pollo`+2huevos |
| common name |
organismal metagenome |
| country |
GAZ:Spain |
| country_nation |
Spain |
| country_region |
Hoya de Guadix |
| culturing_date |
6/14/07 |
| depth |
0 |
| dna_extracted |
true |
| elevation |
1106 |
| empo_0 |
EMP sample |
| empo_1 |
Host-associated |
| empo_2 |
Animal |
| empo_3 |
Animal surface |
| enterobacteriaceae_density |
8162515.627 |
| enterococcus_density |
107506.3034 |
| env biome |
mediterranean shrubland biome |
| env feature |
nest of bird |
| env matter |
egg |
| env package |
host-associated |
| eppendorf_name |
GOR 1.1 |
| estefania_plates |
5G10 |
| extracted DNA avail now |
true |
| feathers |
true |
| fledge_success_brood |
Missing: Not collected |
| fledge_success_clutch |
Missing: Not collected |
| fledging_date |
6/25/07 |
| geo loc name |
Spain:Hoya de Guadix |
| hatching_date |
6/14/07 |
| hatching_success |
Missing: Not collected |
| hatching_synchrony |
asyn |
| host common name |
House sparrow |
| host scientific name |
Passeriformes |
| host subject id |
Gorrioncomun.Gor1.1 |
| host taxid |
48849 |
| latitude |
37.25371111 |
| lay_date_juliane_days |
144 |
| laying_date |
8/23/07 |
| log_enterobacteriaceae_density |
6.911824079 |
| log_enterococcus_density |
5.031437969 |
| log_mesophiles_density |
7.272168046 |
| log_rel_growth_enterobact |
-5.359875173 |
| log_rel_growth_enterococcus |
-3.835434994 |
| log_rel_growth_mesophiles |
-0.121869497 |
| log_rel_growth_staphylococcus |
0 |
| log_staphylococcus_density |
0 |
| longitude |
-3.029825 |
| mesophiles_density |
1.871406022E7 |
| nest_type |
hole |
| number_fledging |
4 |
| number_sampled_eggs |
6 |
| observer |
Juanma |
| physical_specimen_location |
CCME |
| physical_specimen_remaining |
true |
| plants |
true |
| platero_plates |
P5D04 |
| predated |
No |
| public |
true |
| rel_growth_enterobacteriaceae |
-0.999995634 |
| rel_growth_enterococcus |
-0.999853929 |
| rel_growth_staphylococcus |
0 |
| relative_growth_mesophiles |
-0.244680838 |
| required_sample_info_status |
completed |
| sample name |
qiita_sid_1632:1632.E5G10.Knight16sV4.JuannaBirdEMP.NoIndex.L005.R1.001.sequences |
| sample type |
bird egg shell |
| sample_nest |
Gorrioncomun.Gor1.1 |
| sample_progress |
sequenced (16S) |
| sampling time |
1 |
| sampling_code_id |
526 |
| species name |
Passer domesticus |
| staphylococcus_density |
0 |
| storing_days |
14 |
| unhatched_eggs |
Missing: Not provided |
| year |
2007 |