home > sra-sample > ERS1268786
identifier ERS1268786
type sra-sample
sameAs
biosample　 SAMEA4357337
organism human vaginal metagenome
attributes
ENA first public　 2016-07-29
ENA last update　 2016-07-27
External Id　 SAMEA4357337
INSDC center alias　 UCSDMI
INSDC center name　 University of California San Diego Microbiome Initiative
INSDC first public　 2016-07-29T17:01:14Z
INSDC last update　 2016-07-27T07:19:06Z
INSDC status　 public
Submitter Id　 qiita_sid_2024:2024.birth.MNIH94NP.BFF100.V
adult_infant　 adult
age　 21
age unit　 years
altitude　 0
anonymized name　 MNIH94NP
assigned_from_geo　 true
bmi　 22.66666667
body habitat　 UBERON:genito-urinary system
body product　 UBERON:mucus
body site　 UBERON:vagina
bp_dia　 70
bp_sys　 110
bv_results　 i
collection_timestamp　 12/11/2012
comments　 Blood on Vaginal Swab
common name　 vagina metagenome
compliance　 62.5
country　 Tanzania: GAZ
date extracted　 10.25.13
date_delivery　 11.09.12
days_on_yogurt　 48
days_rcvd_yogurt　 30
depth　 0
dna_extracted　 true
dob　 01.09.91
elevation　 1147
env biome　 dense settlement biome
env feature　 hospital
env matter　 mucus
env package　 host-associated
env_material　 mucus
fetal_hb　 Missing: Not recorded
fetal_movement_24h　 Missing: Not recorded
fetal_presentation　 Missing: Not recorded
first_day_yogurt　 10-Oct-12
fundal_size　 Missing: Not recorded
gestation_time　 Missing: Not recorded
has_extracted_data　 true
has_physical_specimen　 true
head_circumference_2　 Missing: Not recorded
head_circumfrence_1　 Missing: Not recorded
head_circumfrence_2　 nan
height or length　 1.5
hemoglobin　 119
history_cong　 Missing: Not recorded
history_sub_fert　 Missing: Not recorded
hiv　 nan
host common name　 human
host scientific name　 Homo sapiens
host subject id　 MNIH94NP
host taxid　 9606
ideal_weight　 MIssing: Not provided
infant_alive_deceased　 deceased
last_period　 MIssing: Not provided
latitude　 2.75
length_infant_1　 MIssing: Not provided
length_infant_2　 MIssing: Not provided
lims　 BFF100
live births　 MIssing: Not provided
living_children　 MIssing: Not provided
longitude　 32.75
malaria　 2
molar_preg　 MIssing: Not provided
muac_infant_1　 MIssing: Not provided
muac_infant_2　 MIssing: Not provided
muac_mm　 243
nausea　 MIssing: Not provided
norm_fetal_mov　 MIssing: Not provided
nourishment_status_group　 nourished_probiotic
nugent score　 6
ob_complications　 MIssing: Not provided
other_ob_history　 MIssing: Not provided
perc_dev　 MIssing: Not provided
physical samp avail now　 true
physical_location　 UWO
physical_specimen_location　 UWO
physical_specimen_remaining　 false
place_delivery　 4
prev_pregnancies　 MIssing: Not provided
public　 false
pulse　 78
required_sample_info_status　 completed
resp_rate　 16
sample name　 qiita_sid_2024:2024.birth.MNIH94NP.BFF100.V
sample type　 vaginal
sex　 female
sex_infant_1　 male
spon_abortions　 MIssing: Not provided
still_births　 MIssing: Not provided
stool_parasite　 MIssing: Not provided
syph　 MIssing: Not provided
time_delivery　 MIssing: Not provided
tot_mass　 51
urine_bilirubin　 0
urine_blood　 30
urine_haemolysis　 Missing: Not reported
urine_ketone　 0
urine_leukocyte　 0
urine_nitrite　 0
urine_ph　 6
urine_protein　 0
urine_spec_grav　 1.025
urine_sugar　 0
urine_urobilinogen　 0
vag_delivery　 MIssing: Not provided
vaginal_csection　 2
vaginal_ph　 5
well location　 H8
well_plate　 H
properties　▽ 
{...}
dbXrefs
bioproject　 PRJEB14941
sra-run　 ERR1550256
sra-submission　 ERA678400
biosample　 SAMEA4357337
sra-study　 ERP016621
sra-experiment　 ERX1621026
distribution JSONJSON-LD
Download
ERA678400.sample.xml　 HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-07-30T12:48:07Z
dateModified 2021-09-24T10:57:54Z
datePublished 2016-07-30T13:20:12Z