| ENA first public |
2016-08-21 |
| ENA last update |
2016-08-17 |
| External Id |
SAMEA4385254 |
| INSDC center alias |
UCSDMI |
| INSDC center name |
University of California San Diego Microbiome Initiative |
| INSDC first public |
2016-08-21T17:01:18Z |
| INSDC last update |
2016-08-17T21:54:29Z |
| INSDC status |
public |
| Submitter Id |
qiita_sid_10248:10248.DACA.2.5 |
| age |
33 |
| age units |
days |
| altitude |
0 |
| ammonium_units |
ug/mL |
| anonymized name |
DACA_2.5 |
| assigned_from_geo |
true |
| bacterial_diversity |
5 |
| barcode |
TTAAGCGCCTGA |
| bodo_sp |
0 |
| bodo_sp_units |
per mL |
| center_name |
Berkeley |
| center_project_name |
Armitage pitcher plants |
| chilomonas |
0 |
| chilomonas_units |
per mL |
| chlamydomonas |
0 |
| chlamydomonas_units |
per mL |
| collection_timestamp |
07/16/2013 |
| colpoda |
0 |
| colpoda_units |
per mL |
| common name |
plant metagenome |
| country |
GAZ:United States of America |
| dna_extracted |
true |
| dry_mass_pitcher |
5.018 |
| elevation |
1174.582764 |
| env biome |
fresh water |
| env feature |
pool |
| env matter |
eutrophic water |
| env package |
plant-associated |
| env_material |
eutrophic water |
| experiment_design_description |
timeseries study of pitcher plants |
| extracted DNA avail now |
true |
| geo loc name |
USA:CA,Quincy |
| has_physical_specimen |
true |
| host common name |
pitcher plant |
| host scientific name |
Darlingtonia californica |
| host subject id |
DACA_2.5 |
| host taxid |
4355 |
| instrument model |
Illumina HiSeq 2000 |
| labeled_15n_residence |
11 |
| labeled_15n_residence_units |
days |
| latitude |
39.985619 |
| library construction protocol |
Illumina HiSeq 515f, 806r amplification of 16SrRNA V4 |
| linker |
GT |
| log_lower |
22.56931268 |
| log_mean_bact |
22.635137 |
| log_mean_virus |
22.04712858 |
| log_upper |
22.7009229 |
| longitude |
-120.987003 |
| lower_95_ci_perct_bact |
6334727768 |
| lower_95_ci_perct_virus |
3439329862 |
| mean_bact |
6765736780 |
| mean_bact_units |
ind per mil |
| mean_viruses |
3757909231 |
| midge_total |
46 |
| mite_total |
12 |
| monas |
0 |
| monas_units |
per mL |
| nitrate_units |
ug/mL |
| pcr primers |
FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT |
| petalomonas |
0 |
| petalomonas_units |
per mL |
| phosphate_units |
ug/mL |
| physical samp avail now |
true |
| physical_specimen_location |
UC Berkeley |
| physical_specimen_remaining |
false |
| platform |
Illumina |
| polytoma |
0 |
| polytoma_units |
per mL |
| polytomella |
840783 |
| polytomella_units |
per mL |
| primer |
GTGTGCCAGCMGCCGCGGTAA |
| public |
true |
| required_sample_info_status |
completed |
| respiration |
11.317 |
| respiration_units |
ug CO2-C/mg/day |
| rhynchobodo |
0 |
| rhynchobodo_units |
per mL |
| rotifer |
0 |
| rotifer_units |
per mL |
| run center |
ANL |
| run date |
10/1/14 |
| run prefix |
141021_AMP4_NoIndex_L004 |
| sample name |
qiita_sid_10248:10248.DACA.2.5 |
| sample number |
13 |
| sample site |
Blackhawk Creek, Plumas National Forest, Quincy, CA |
| sample type |
eutrophic water |
| sequencing_meth |
Sequencing by synthesis |
| target gene |
16S rRNA |
| target subfragment |
V4 |
| upper_95_ci_perct_bact |
7225793547 |
| upper_95_ci_perct_virus |
4105619820 |
| virus_bacteria_ratio |
0.555432373 |
| well |
B1 |