ENA first public |
2016-08-21 |
ENA last update |
2016-08-17 |
External Id |
SAMEA4385267 |
INSDC center alias |
UCSDMI |
INSDC center name |
University of California San Diego Microbiome Initiative |
INSDC first public |
2016-08-21T17:01:18Z |
INSDC last update |
2016-08-17T21:54:29Z |
INSDC status |
public |
Submitter Id |
qiita_sid_10248:10248.DACA.3.8 |
age |
66 |
age units |
days |
altitude |
0 |
ammonium_units |
ug/mL |
anonymized name |
DACA_3.8 |
assigned_from_geo |
true |
bacterial_diversity |
5 |
barcode |
ACGTGAGGAACG |
bodo_sp |
0 |
bodo_sp_units |
per mL |
center_name |
Berkeley |
center_project_name |
Armitage pitcher plants |
chilomonas |
0 |
chilomonas_units |
per mL |
chlamydomonas |
0 |
chlamydomonas_units |
per mL |
collection_timestamp |
08/18/2013 |
colpoda |
0 |
colpoda_units |
per mL |
common name |
plant metagenome |
country |
GAZ:United States of America |
dna_extracted |
true |
dry_mass_pitcher |
3.439 |
elevation |
1174.582764 |
env biome |
fresh water |
env feature |
pool |
env matter |
eutrophic water |
env package |
plant-associated |
env_material |
eutrophic water |
experiment_design_description |
timeseries study of pitcher plants |
extracted DNA avail now |
true |
geo loc name |
USA:CA,Quincy |
has_physical_specimen |
true |
host common name |
pitcher plant |
host scientific name |
Darlingtonia californica |
host subject id |
DACA_3.8 |
host taxid |
4355 |
instrument model |
Illumina HiSeq 2000 |
labeled_15n_residence |
22 |
labeled_15n_residence_units |
days |
latitude |
39.985619 |
library construction protocol |
Illumina HiSeq 515f, 806r amplification of 16SrRNA V4 |
linker |
GT |
log_lower |
25.25347801 |
log_mean_bact |
25.30607207 |
log_mean_virus |
23.83997172 |
log_upper |
25.35864625 |
longitude |
-120.987003 |
lower_95_ci_perct_bact |
92778243951 |
lower_95_ci_perct_virus |
20214592151 |
mean_bact |
97788426810 |
mean_bact_units |
ind per mil |
mean_viruses |
22571902495 |
midge_total |
12 |
mite_total |
0 |
monas |
0 |
monas_units |
per mL |
nitrate_units |
ug/mL |
pcr primers |
FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT |
petalomonas |
0 |
petalomonas_units |
per mL |
phosphate_units |
ug/mL |
physical samp avail now |
true |
physical_specimen_location |
UC Berkeley |
physical_specimen_remaining |
false |
platform |
Illumina |
polytoma |
0 |
polytoma_units |
per mL |
polytomella |
236273 |
polytomella_units |
per mL |
primer |
GTGTGCCAGCMGCCGCGGTAA |
public |
true |
required_sample_info_status |
completed |
respiration |
15.913 |
respiration_units |
ug CO2-C/mg/day |
rhynchobodo |
0 |
rhynchobodo_units |
per mL |
rotifer |
0 |
rotifer_units |
per mL |
run center |
ANL |
run date |
10/1/14 |
run prefix |
141021_AMP4_NoIndex_L004 |
sample name |
qiita_sid_10248:10248.DACA.3.8 |
sample number |
29 |
sample site |
Blackhawk Creek, Plumas National Forest, Quincy, CA |
sample type |
eutrophic water |
sequencing_meth |
Sequencing by synthesis |
target gene |
16S rRNA |
target subfragment |
V4 |
upper_95_ci_perct_bact |
1.03E11 |
upper_95_ci_perct_virus |
25199678209 |
virus_bacteria_ratio |
0.230823864 |
well |
C5 |