| attributes |
| ENA first public |
2017-01-30 |
| ENA last update |
2016-10-21 |
| External Id |
SAMEA4473279 |
| INSDC center alias |
MPIEVB |
| INSDC center name |
Max-Planck-Institute for Evolutionary Biology |
| INSDC first public |
2017-01-30T17:01:02Z |
| INSDC last update |
2016-10-21T09:40:30Z |
| INSDC status |
public |
| Submitter Id |
REI_31_DNA |
| adapters |
R1-TATGGTAATTGTAGAGTTTGATCCTGGCTCAG;R2-AGTCAGTCAGCCTGCTGCCTCCCGTAGGAGT |
| cage |
SREI-04384 |
| collection date |
2016 |
| common name |
house mouse |
| environment (biome) |
host associated |
| environment (feature) |
cecum content |
| environment (material) |
cecum content |
| experimental factor |
genotype |
| geographic location (country and/or sea) |
Germany |
| geographic location (latitude) |
49�59'35,6N |
| geographic location (longitude) |
8�15'31,3E |
| host body habitat |
gut |
| host body site |
cecum |
| host common name |
house mouse |
| host genotype |
TLR2+/+ |
| host life stage |
adult |
| host sex |
male |
| host subject id |
REI-B315 |
| host taxid |
10090 |
| host-associated environmental package |
host-associated |
| investigation type |
metagenome |
| multiplex identifiers |
R1-CAGTTGAC,R2-AGAGTGTG |
| nucleic acid amplification |
PMID:27053239 |
| nucleic acid extraction |
Qiagen AllPrep DNA/RNA |
| pcr conditions |
98�C-30s, 30 � [98�C-9s, 55�C-60s, 72�C-90s], 72�C-10 min |
| pcr primers |
27F-338R |
| project name |
Gut microbiota regulate hepatic von Willebrand Factor synthesis and arterial thrombosis via Toll-like receptor-2 |
| sample name |
REI_31_DNA |
| sequencing method |
Illumina Miseq |
| subspecific genetic lineage |
C57BL/6J |
| target gene |
16S rRNA |
| target subfragment |
V1V2 |
|