| attributes |
| DNA extraction batch |
E |
| ENA first public |
2017-08-16 |
| ENA last update |
2016-11-03 |
| External Id |
SAMEA4534402 |
| INSDC center alias |
UH/IB |
| INSDC center name |
Institute of Biotechnology, University of Helsinki |
| INSDC first public |
2017-08-16T17:01:52Z |
| INSDC last update |
2016-11-03T14:29:08Z |
| INSDC status |
public |
| Submitter Id |
psc25 |
| collection date |
2011-05-31 |
| environment (biome) |
terrestrial biome |
| environment (feature) |
human-associated habitat |
| environment (material) |
bile |
| environmental package |
human-associated |
| geographic location (country and/or sea) |
Finland |
| geographic location (latitude) |
60.189122 |
| geographic location (longitude) |
24.907119 |
| host age |
50.57 |
| host body mass index |
27.21065521 |
| host body product |
bile |
| host height |
172 |
| host sex |
female |
| host total mass |
80.5 |
| human associated environmental package |
human-associated |
| ibd |
no |
| investigation type |
metagenome |
| latest_erc_score |
12 |
| pcr primers |
forward: AGAGTTTGATCMTGGCTCAG, reverse: GTATTACCGCGGCTGCTG |
| pcs_duration |
11 |
| project name |
Bile microbiota in PSC |
| psc |
1 |
| psc_stage |
dysplasia/carcinoma |
| sample name |
psc25 |
| sequencing method |
Illumina MiSeq |
| sequencing_run_batch |
B |
| target gene |
16S |
| target subfragment |
V1-V3 |
| total_number_of_erc_procedures |
9 |
|