| Alias |
qiita_sid_10317:10317.000011930 |
| Description |
American Gut Project Stool Sample |
| ENA checklist |
ERC000011 |
| INSDC center name |
UCSDMI |
| INSDC first public |
2017-02-20T17:01:30Z |
| INSDC last update |
2017-08-06T13:16:41Z |
| INSDC status |
public |
| SRA accession |
ERS1564412 |
| Sample Name |
ERS1564412 |
| Title |
10317.00001193 |
| acid_reflux |
Not provided |
| acne_medication |
false |
| acne_medication_otc |
false |
| add_adhd |
I do not have this condition |
| age_cat |
40s |
| age_corrected |
45 |
| age_years |
45 |
| alcohol_consumption |
true |
| alcohol_frequency |
Occasionally (1-2 times/week) |
| alcohol_types |
Not provided |
| alcohol_types_beercider |
No |
| alcohol_types_red_wine |
true |
| alcohol_types_sour_beers |
false |
| alcohol_types_spiritshard_alcohol |
false |
| alcohol_types_unspecified |
false |
| alcohol_types_white_wine |
false |
| allergic_to |
Not provided |
| allergic_to_i_have_no_food_allergies_that_i_know_of |
true |
| allergic_to_other |
false |
| allergic_to_peanuts |
false |
| allergic_to_shellfish |
false |
| allergic_to_tree_nuts |
false |
| allergic_to_unspecified |
false |
| alzheimers |
I do not have this condition |
| anonymized_name |
000011930 |
| antibiotic_history |
Year |
| appendix_removed |
false |
| artificial_sweeteners |
Not provided |
| asd |
I do not have this condition |
| autoimmune |
I do not have this condition |
| birth_year |
1970 |
| bmi |
19.26 |
| bmi_cat |
Normal |
| bmi_corrected |
19.26 |
| body_habitat |
UBERON:feces |
| body_product |
UBERON:feces |
| body_site |
UBERON:feces |
| bowel_movement_frequency |
Less than one |
| bowel_movement_quality |
I tend to have normal formed stool - Type 3 and 4 |
| breastmilk_formula_ensure |
false |
| cancer |
Not provided |
| cancer_treatment |
Not provided |
| cardiovascular_disease |
I do not have this condition |
| cat |
false |
| cdiff |
I do not have this condition |
| census_region |
West |
| chickenpox |
Yes |
| clinical_condition |
I do not have this condition |
| collection_date |
2015-12-17 |
| collection_month |
December |
| collection_season |
Winter |
| collection_time |
11:30 |
| collection_timestamp |
2015-12-17 11:30 |
| consume_animal_products_abx |
Not sure |
| contraceptive |
No |
| cosmetics_frequency |
Daily |
| country |
USA |
| country_of_birth |
United States |
| country_residence |
Not provided |
| csection |
false |
| deodorant_use |
I use an antiperspirant |
| depression_bipolar_schizophrenia |
Diagnosed by a medical professional (doctor, physician assistant) |
| diabetes |
I do not have this condition |
| diabetes_type |
Not provided |
| diet_type |
Vegetarian but eat seafood |
| dna_extracted |
true |
| dog |
true |
| dominant_hand |
I am right handed |
| drinking_water_source |
City |
| drinks_per_session |
Not provided |
| economic_region |
Far West |
| elevation |
30.6 |
| env_biome |
dense settlement biome |
| env_feature |
human-associated habitat |
| env_material |
feces |
| env_package |
human-gut |
| epilepsy_or_seizure_disorder |
I do not have this condition |
| exercise_frequency |
Daily |
| exercise_location |
Indoors |
| fed_as_infant |
Primarily infant formula |
| fermented_plant_frequency |
Regularly (3-5 times/week) |
| flossing_frequency |
Occasionally (1-2 times/week) |
| flu_vaccine_date |
6 months |
| frozen_dessert_frequency |
Never |
| fruit_frequency |
Regularly (3-5 times/week) |
| fungal_overgrowth |
I do not have this condition |
| geo_loc_name |
USA:CA |
| gluten |
No |
| has_physical_specimen |
true |
| height_cm |
170 |
| height_units |
centimeters |
| high_fat_red_meat_frequency |
Never |
| homecooked_meals_frequency |
Daily |
| host_common_name |
Homo sapiens |
| host_subject_id |
0deb0519df4553f51b90a13501929432c2a3f53c3a82851f97084f1c704308ecbad2a72cf3ebc60d3a5a4f4ba92e8f5a37e4e9dd4f7d8f237b6d2ab51acb54c3 |
| host_taxid |
9606 |
| ibd |
I do not have this condition |
| ibd_diagnosis |
Not provided |
| ibd_diagnosis_refined |
Not provided |
| ibs |
I do not have this condition |
| kidney_disease |
I do not have this condition |
| lactose |
false |
| last_move |
I have lived in my current state of residence for more than a year. |
| last_travel |
I have not been outside of my country of residence in the past year. |
| latitude |
37.4 |
| level_of_education |
Graduate or Professional degree |
| liver_disease |
I do not have this condition |
| livingwith |
Not sure |
| longitude |
-122.1 |
| lowgrain_diet_type |
false |
| lung_disease |
I do not have this condition |
| meat_eggs_frequency |
Never |
| mental_illness |
Not provided |
| mental_illness_type |
Not provided |
| mental_illness_type_anorexia_nervosa |
Not provided |
| mental_illness_type_bipolar_disorder |
Not provided |
| mental_illness_type_bulimia_nervosa |
Not provided |
| mental_illness_type_depression |
Not provided |
| mental_illness_type_ptsd_posttraumatic_stress_disorder |
Not provided |
| mental_illness_type_schizophrenia |
Not provided |
| mental_illness_type_substance_abuse |
Not provided |
| mental_illness_type_unspecified |
Not provided |
| migraine |
I do not have this condition |
| milk_cheese_frequency |
Regularly (3-5 times/week) |
| milk_substitute_frequency |
Daily |
| multivitamin |
false |
| nail_biter |
false |
| non_food_allergies |
Not provided |
| non_food_allergies_beestings |
false |
| non_food_allergies_drug_eg_penicillin |
false |
| non_food_allergies_pet_dander |
false |
| non_food_allergies_poison_ivyoak |
false |
| non_food_allergies_sun |
false |
| non_food_allergies_unspecified |
true |
| olive_oil |
Regularly (3-5 times/week) |
| one_liter_of_water_a_day_frequency |
Regularly (3-5 times/week) |
| other_supplement_frequency |
false |
| pets_other |
Not provided |
| physical_specimen_location |
UCSDMI |
| physical_specimen_remaining |
true |
| pku |
I do not have this condition |
| pool_frequency |
Never |
| poultry_frequency |
Never |
| pregnant |
false |
| prepared_meals_frequency |
Rarely (less than once/week) |
| probiotic_frequency |
Never |
| public |
true |
| race |
Caucasian |
| ready_to_eat_meals_frequency |
Never |
| red_meat_frequency |
Never |
| roommates |
Two |
| roommates_in_study |
No |
| salted_snacks_frequency |
Occasionally (1-2 times/week) |
| sample_type |
Stool |
| seafood_frequency |
Occasionally (1-2 times/week) |
| seasonal_allergies |
Yes |
| sex |
female |
| sibo |
I do not have this condition |
| skin_condition |
Diagnosed by a medical professional (doctor, physician assistant) |
| sleep_duration |
7-8 hours |
| smoking_frequency |
Never |
| softener |
No |
| specialized_diet |
Not provided |
| specialized_diet_exclude_dairy |
Not provided |
| specialized_diet_exclude_nightshades |
Not provided |
| specialized_diet_exclude_refined_sugars |
Not provided |
| specialized_diet_fodmap |
Not provided |
| specialized_diet_halaal |
Not provided |
| specialized_diet_i_do_not_eat_a_specialized_diet |
Not provided |
| specialized_diet_kosher |
Not provided |
| specialized_diet_modified_paleo_diet |
Not provided |
| specialized_diet_other_restrictions_not_described_here |
Not provided |
| specialized_diet_paleodiet_or_primal_diet |
Not provided |
| specialized_diet_raw_food_diet |
Not provided |
| specialized_diet_unspecified |
Not provided |
| specialized_diet_westenprice_or_other_lowgrain_low_processed_fo |
Not provided |
| state |
CA |
| subset_age |
true |
| subset_antibiotic_history |
false |
| subset_bmi |
true |
| subset_diabetes |
true |
| subset_healthy |
false |
| subset_ibd |
true |
| sugar_sweetened_drink_frequency |
Never |
| sugary_sweets_frequency |
Daily |
| survey_id |
e687ed0d5ac92866 |
| teethbrushing_frequency |
Daily |
| thyroid |
I do not have this condition |
| title |
American Gut Project |
| tonsils_removed |
false |
| types_of_plants |
Not provided |
| vegetable_frequency |
Daily |
| vioscreen_a_bev |
1.101589088 |
| vioscreen_a_cal |
137.1962115 |
| vioscreen_acesupot |
0 |
| vioscreen_activity_level |
Not provided |
| vioscreen_add_sug |
15.83531411 |
| vioscreen_addsugar |
77.87943065 |
| vioscreen_adsugtot |
61.78561644 |
| vioscreen_age |
215 |
| vioscreen_alanine |
1.951479225 |
| vioscreen_alcohol |
17.18262923 |
| vioscreen_alcohol_servings |
1.10159 |
| vioscreen_alphacar |
6277.241781 |
| vioscreen_alphtoce |
8.656302173 |
| vioscreen_alphtoco |
7.853151086 |
| vioscreen_arginine |
2.474493157 |
| vioscreen_ash |
17.64854987 |
| vioscreen_aspartam |
607.0601884 |
| vioscreen_aspartic |
4.129287511 |
| vioscreen_avcarb |
197.9843108 |
| vioscreen_bcodeid |
Not provided |
| vioscreen_betacar |
13212.31096 |
| vioscreen_betacryp |
86.84297945 |
| vioscreen_betaine |
164.6573416 |
| vioscreen_betatoco |
0.393589009 |
| vioscreen_biochana |
0.002109589 |
| vioscreen_bmi |
Not provided |
| vioscreen_caffeine |
348.9953125 |
| vioscreen_calcium |
Yes |
| vioscreen_calcium_avg |
Not provided |
| vioscreen_calcium_dose |
800 |
| vioscreen_calcium_freq |
Less than once per week |
| vioscreen_calcium_from_dairy_servings |
1.168 |
| vioscreen_calcium_servings |
2.95044 |
| vioscreen_calories |
1503.049315 |
| vioscreen_carbo |
226.5605308 |
| vioscreen_cholest |
51.5807363 |
| vioscreen_choline |
219.3212329 |
| vioscreen_clac9t11 |
0.023726027 |
| vioscreen_clat10c12 |
0.004136986 |
| vioscreen_copper |
1.308876769 |
| vioscreen_coumest |
0.218904114 |
| vioscreen_cystine |
0.559369858 |
| vioscreen_d_cheese |
0.365726042 |
| vioscreen_d_milk |
0.052575344 |
| vioscreen_d_tot_soym |
1.415863121 |
| vioscreen_d_total |
1.16800002 |
| vioscreen_d_yogurt |
0.74969867 |
| vioscreen_daidzein |
4.731123582 |
| vioscreen_database |
NDSR - V44 |
| vioscreen_delttoco |
1.31800002 |
| vioscreen_discfat_oil |
15.6351509 |
| vioscreen_discfat_sol |
17.80150631 |
| vioscreen_dob |
1/1/1800 |
| vioscreen_eer |
Not provided |
| vioscreen_email |
Not provided |
| vioscreen_erythr |
3.0137E-4 |
| vioscreen_f_citmlb |
0.76446575 |
| vioscreen_f_nj_citmlb |
0.760958904 |
| vioscreen_f_nj_other |
0.645863029 |
| vioscreen_f_nj_total |
1.406904163 |
| vioscreen_f_other |
0.645863029 |
| vioscreen_f_total |
1.410410925 |
| vioscreen_fat |
38.80759043 |
| vioscreen_fiber |
28.57671768 |
| vioscreen_fibh2o |
9.813563517 |
| vioscreen_fibinso |
18.87937179 |
| vioscreen_finished |
1/10/15 |
| vioscreen_fish_servings |
1.32635 |
| vioscreen_fol_deqv |
328.4918236 |
| vioscreen_fol_nat |
281.2982235 |
| vioscreen_fol_syn |
27.79728703 |
| vioscreen_formontn |
0.002164383 |
| vioscreen_fried_fish_servings |
0 |
| vioscreen_fried_food_servings |
0 |
| vioscreen_frt5_day |
2 |
| vioscreen_frtsumm |
2.8 |
| vioscreen_fructose |
19.29564426 |
| vioscreen_fruit_servings |
2 |
| vioscreen_g_nwhl |
3.103178176 |
| vioscreen_g_total |
4.230821918 |
| vioscreen_g_whl |
1.127643909 |
| vioscreen_galactos |
1.174246508 |
| vioscreen_gammtoco |
6.348438838 |
| vioscreen_gender |
F |
| vioscreen_genistn |
5.052164491 |
| vioscreen_glac |
100.8077269 |
| vioscreen_gltc |
113.2346104 |
| vioscreen_glucose |
22.68487532 |
| vioscreen_glutamic |
9.379042032 |
| vioscreen_glycine |
1.738739766 |
| vioscreen_glycitn |
1.410821951 |
| vioscreen_grams |
3964.266438 |
| vioscreen_hei2010_dairy |
7.2 |
| vioscreen_hei2010_empty_calories |
13.9 |
| vioscreen_hei2010_fatty_acids |
6.2 |
| vioscreen_hei2010_fruit |
5 |
| vioscreen_hei2010_greens_beans |
5 |
| vioscreen_hei2010_protien_foods |
3.3 |
| vioscreen_hei2010_refined_grains |
8.9 |
| vioscreen_hei2010_score |
74.9 |
| vioscreen_hei2010_sea_foods_plant_protiens |
5 |
| vioscreen_hei2010_sodium |
5.4 |
| vioscreen_hei2010_veg |
5 |
| vioscreen_hei2010_whole_fruit |
5 |
| vioscreen_hei2010_whole_grains |
5 |
| vioscreen_hei_drk_g_org_veg_leg |
5 |
| vioscreen_hei_fruit |
5 |
| vioscreen_hei_grains |
4.7 |
| vioscreen_hei_meat_beans |
6.6 |
| vioscreen_hei_milk |
7.2 |
| vioscreen_hei_non_juice_frt |
5 |
| vioscreen_hei_oils |
8.7 |
| vioscreen_hei_sat_fat |
10 |
| vioscreen_hei_score |
72.3 |
| vioscreen_hei_sodium |
4.3 |
| vioscreen_hei_sol_fat_alc_add_sug |
8.3 |
| vioscreen_hei_veg |
5 |
| vioscreen_hei_whl_grains |
2.5 |
| vioscreen_height |
Not provided |
| vioscreen_histidin |
1.124356121 |
| vioscreen_inositol |
0.208931513 |
| vioscreen_iron |
10.61030073 |
| vioscreen_isoleuc |
1.950410691 |
| vioscreen_isomalt |
0 |
| vioscreen_joules |
6288.758904 |
| vioscreen_juice_servings |
0.00696 |
| vioscreen_lactitol |
0 |
| vioscreen_lactose |
12.17013725 |
| vioscreen_legumes |
0.106931504 |
| vioscreen_leucine |
3.475150498 |
| vioscreen_line_gi |
617.8974315 |
| vioscreen_low_fat_dairy_serving |
0.7497 |
| vioscreen_lutzeax |
3555.867808 |
| vioscreen_lycopene |
1315.279709 |
| vioscreen_lysine |
2.768630271 |
| vioscreen_m_egg |
0.004821918 |
| vioscreen_m_fish_hi |
0.610931522 |
| vioscreen_m_fish_lo |
0.144904108 |
| vioscreen_m_frank |
0 |
| vioscreen_m_meat |
0 |
| vioscreen_m_mpf |
0.75583563 |
| vioscreen_m_nutsd |
1.212082202 |
| vioscreen_m_organ |
0 |
| vioscreen_m_poult |
0 |
| vioscreen_m_soy |
0.340657524 |
| vioscreen_magnes |
339.9030394 |
| vioscreen_maltitol |
0 |
| vioscreen_maltose |
6.614986221 |
| vioscreen_mangan |
4.997343549 |
| vioscreen_mannitol |
0.277643805 |
| vioscreen_methhis3 |
2.271999913 |
| vioscreen_methion |
0.917561487 |
| vioscreen_mfa141 |
0.033041094 |
| vioscreen_mfa161 |
0.442273953 |
| vioscreen_mfa181 |
13.72668557 |
| vioscreen_mfa201 |
0.242219188 |
| vioscreen_mfa221 |
0.124301377 |
| vioscreen_mfatot |
14.76638485 |
| vioscreen_multi_calcium_avg |
Not provided |
| vioscreen_multi_calcium_dose |
Not provided |
| vioscreen_multivitamin |
Not provided |
| vioscreen_multivitamin_freq |
Not provided |
| vioscreen_natoco |
7.853151086 |
| vioscreen_nccglbr |
159.4689747 |
| vioscreen_nccglgr |
111.5711687 |
| vioscreen_niacin |
13.14802948 |
| vioscreen_niacineq |
21.05879575 |
| vioscreen_nitrogen |
7.999095676 |
| vioscreen_non_fried_fish_servings |
1.32635 |
| vioscreen_nutrient_recommendation |
Default |
| vioscreen_omega3 |
1.115232786 |
| vioscreen_oxalic |
145.1677654 |
| vioscreen_oxalicm |
138.3862265 |
| vioscreen_pantothe |
5.227561804 |
| vioscreen_pectins |
4.807616519 |
| vioscreen_pfa182 |
7.55041136 |
| vioscreen_pfa183 |
0.794958663 |
| vioscreen_pfa184 |
0.027506849 |
| vioscreen_pfa204 |
0.024246576 |
| vioscreen_pfa205 |
0.087452055 |
| vioscreen_pfa225 |
0.033260272 |
| vioscreen_pfa226 |
0.171534238 |
| vioscreen_pfatot |
8.790439721 |
| vioscreen_phenylal |
2.088520541 |
| vioscreen_phosphor |
1112.547432 |
| vioscreen_phytic |
801.1351884 |
| vioscreen_pinitol |
0.043232876 |
| vioscreen_potass |
2887.756164 |
| vioscreen_procdate |
10/28/15 |
| vioscreen_proline |
3.51430129 |
| vioscreen_protanim |
18.62312313 |
| vioscreen_protein |
48.53291417 |
| vioscreen_protocol |
Knight Lab, University of Colorado Boulder |
| vioscreen_protveg |
29.89710242 |
| vioscreen_questionnaire |
Egg White Standard Questionnaire (V3) |
| vioscreen_recno |
635 |
| vioscreen_retinol |
134.9151434 |
| vioscreen_rgrain |
1.979369783 |
| vioscreen_ribofla |
1.91909581 |
| vioscreen_sacchar |
0 |
| vioscreen_salad_vegetable_servings |
0.37236 |
| vioscreen_satoco |
0 |
| vioscreen_selenium |
63.29662885 |
| vioscreen_serine |
2.315260628 |
| vioscreen_sfa100 |
0.222547954 |
| vioscreen_sfa120 |
0.257780833 |
| vioscreen_sfa140 |
1.05046579 |
| vioscreen_sfa160 |
6.370822185 |
| vioscreen_sfa170 |
0.035369863 |
| vioscreen_sfa180 |
2.678904076 |
| vioscreen_sfa200 |
0.128465752 |
| vioscreen_sfa220 |
0.187780824 |
| vioscreen_sfa40 |
0.268931496 |
| vioscreen_sfa60 |
0.13380822 |
| vioscreen_sfa80 |
0.09980822 |
| vioscreen_sfatot |
11.72613843 |
| vioscreen_sodium |
2272.457363 |
| vioscreen_sorbitol |
0.518602763 |
| vioscreen_srvid |
16834 |
| vioscreen_starch |
55.58062393 |
| vioscreen_started |
1/10/15 |
| vioscreen_subject_id |
Not provided |
| vioscreen_sucpoly |
0 |
| vioscreen_sucrlose |
0 |
| vioscreen_sucrose |
53.02490368 |
| vioscreen_sweet_servings |
1.833 |
| vioscreen_tagatose |
6.840903922 |
| vioscreen_tfa161t |
0.024438356 |
| vioscreen_tfa181t |
0.540301388 |
| vioscreen_tfa182t |
0.205726038 |
| vioscreen_tgrain |
4.914931708 |
| vioscreen_thiamin |
1.056273912 |
| vioscreen_threonin |
1.635452061 |
| vioscreen_time |
17 |
| vioscreen_totaltfa |
0.818575256 |
| vioscreen_totcla |
0.027890412 |
| vioscreen_totfolat |
309.0955479 |
| vioscreen_totsugar |
116.1310895 |
| vioscreen_tryptoph |
0.476000015 |
| vioscreen_tyrosine |
1.629041029 |
| vioscreen_user_id |
16834 |
| vioscreen_v_drkgr |
0.522027379 |
| vioscreen_v_orange |
1.184849318 |
| vioscreen_v_other |
0.510657533 |
| vioscreen_v_potato |
0 |
| vioscreen_v_starcy |
0 |
| vioscreen_v_tomato |
0.07490411 |
| vioscreen_v_total |
2.292520434 |
| vioscreen_valine |
2.452766983 |
| vioscreen_veg5_day |
4.4 |
| vioscreen_vegetable_servings |
4 |
| vioscreen_vegsumm |
4.6 |
| vioscreen_visit |
1 |
| vioscreen_vita_iu |
27772.36164 |
| vioscreen_vita_rae |
1501.110788 |
| vioscreen_vita_re |
2867.306849 |
| vioscreen_vitb12 |
2.310684831 |
| vioscreen_vitb6 |
1.314054641 |
| vioscreen_vitc |
133.214512 |
| vioscreen_vitd |
4.000383936 |
| vioscreen_vitd2 |
0.63898629 |
| vioscreen_vitd3 |
3.361397354 |
| vioscreen_vitd_iu |
160.0153574 |
| vioscreen_vite_iu |
11.68619167 |
| vioscreen_vitk |
152.3607128 |
| vioscreen_water |
3628.272603 |
| vioscreen_weight |
Not provided |
| vioscreen_wgrain |
2.935863254 |
| vioscreen_whole_grain_servings |
1.12764 |
| vioscreen_xylitol |
0.067972601 |
| vioscreen_zinc |
7.113396966 |
| vitamin_b_supplement_frequency |
Never |
| vitamin_d_supplement_frequency |
Never |
| vivid_dreams |
Not provided |
| weight_change |
Remained stable |
| weight_kg |
55 |
| weight_units |
kilograms |
| whole_eggs |
Never |
| whole_grain_frequency |
Occasionally (1-2 times/week) |