| attributes |
| collection date |
2006-10-12 |
| collection date* |
2006-10-12 |
| environment (biome) |
Human gut |
| environment (biome)* |
Human gut |
| environment (feature) |
Colon |
| environment (feature)* |
Colon |
| environment (material) |
Faeces |
| environment (material)* |
Faeces |
| extraction_plate |
27-1881 |
| gastrointestinal tract disorder |
irritable bowel syndrome |
| geographic location (country and/or sea) |
Sweden |
| geographic location (latitude) |
59.31 |
| geographic location (latitude)* |
59.31 |
| geographic location (longitude) |
18.09 |
| geographic location (longitude)* |
18.09 |
| geographic location (region and locality) |
Stockholm |
| host age |
33 |
| host body product |
Faeces |
| host body-mass index |
29.1 |
| host disease status |
NA |
| host sex |
male |
| host subject id |
4417 |
| human gut environmental package |
human-gut |
| human gut environmental package* |
human-gut |
| investigation type |
mimarks-survey |
| library screening strategy |
PCR amplification |
| pcr primers |
341f/CCTACGGGNGGCWGCAG, 805r/GACTACHVGGGTATCTAATCC |
| project name |
PopCol |
| sample storage duration |
11 |
| sample storage location |
Swedish Center for Communicable Disease Control |
| sample storage temperature |
-80 |
| sequencing method |
Illumina |
| sequencing_run |
180316 |
| target gene |
16S rRNA gene |
| target subfragment |
16S rRNA, V3-V4 |
| ENA-FIRST-PUBLIC |
2019-09-24 |
| ENA-LAST-UPDATE |
2021-08-30 |
|