ENA first public |
2019-09-24 |
ENA last update |
2019-04-24 |
External Id |
SAMEA5575911 |
INSDC center alias |
Centre for Translational Microbiome Research (CTMR) |
INSDC center name |
Centre for Translational Microbiome Research (CTMR) |
INSDC first public |
2019-09-24T17:09:57Z |
INSDC last update |
2019-04-24T09:32:15Z |
INSDC status |
public |
Submitter Id |
170512-P090_TAAGGCGA-GCGTAAGA |
collection date |
2005-01-25 |
collection date* |
2005-01-25 |
environment (biome) |
Human gut |
environment (biome)* |
Human gut |
environment (feature) |
Sigmoid mucosa |
environment (feature)* |
Sigmoid mucosa |
environment (material) |
Pinch biopsy |
environment (material)* |
Pinch biopsy |
extraction_plate |
27-578 |
geographic location (country and/or sea) |
Sweden |
geographic location (latitude) |
59.31 |
geographic location (latitude)* |
59.31 |
geographic location (longitude) |
18.09 |
geographic location (longitude)* |
18.09 |
geographic location (region and locality) |
Ersta hospital, Stockholm |
host age |
27 |
host body mass index |
22.6757 |
host body product |
Mucosal tissue |
host disease status |
mild anxiety |
host sex |
male |
host subject id |
3602 |
human gut environmental package |
human-gut |
human gut environmental package* |
human-gut |
investigation type |
mimarks-survey |
library screening strategy |
PCR amplification |
pcr primers |
341f/CCTACGGGNGGCWGCAG, 805r/GACTACHVGGGTATCTAATCC |
project name |
PopCol |
sample name |
170512-P090_TAAGGCGA-GCGTAAGA |
sample storage duration |
12 |
sample storage location |
Swedish Center for Communicable Disease Control |
sample storage temperature |
-80 |
sequencing method |
Illumina |
sequencing run |
170512 |
target gene |
16S rRNA gene |
target subfragment |
16S rRNA, V3-V4 |