| ENA first public |
2019-09-24 |
| ENA last update |
2019-04-24 |
| External Id |
SAMEA5575927 |
| INSDC center alias |
Centre for Translational Microbiome Research (CTMR) |
| INSDC center name |
Centre for Translational Microbiome Research (CTMR) |
| INSDC first public |
2019-09-24T17:09:57Z |
| INSDC last update |
2019-04-24T09:32:15Z |
| INSDC status |
public |
| Submitter Id |
170512-P122_GGACTCCT-GCGTAAGA |
| collection date |
2005-03-15 |
| collection date* |
2005-03-15 |
| environment (biome) |
Human gut |
| environment (biome)* |
Human gut |
| environment (feature) |
Sigmoid mucosa |
| environment (feature)* |
Sigmoid mucosa |
| environment (material) |
Pinch biopsy |
| environment (material)* |
Pinch biopsy |
| extraction_plate |
27-578 |
| gastrointestinal tract disorder |
Hyperplastic_polyp, IBS(irritable-bowel syndrome) |
| geographic location (country and/or sea) |
Sweden |
| geographic location (latitude) |
59.31 |
| geographic location (latitude)* |
59.31 |
| geographic location (longitude) |
18.09 |
| geographic location (longitude)* |
18.09 |
| geographic location (region and locality) |
Ersta hospital, Stockholm |
| host age |
65 |
| host body mass index |
24.0238 |
| host body product |
Mucosal tissue |
| host disease status |
mild depression,mild anxiety |
| host sex |
female |
| host subject id |
3743 |
| human gut environmental package |
human-gut |
| human gut environmental package* |
human-gut |
| investigation type |
mimarks-survey |
| library screening strategy |
PCR amplification |
| pcr primers |
341f/CCTACGGGNGGCWGCAG, 805r/GACTACHVGGGTATCTAATCC |
| project name |
PopCol |
| sample name |
170512-P122_GGACTCCT-GCGTAAGA |
| sample storage duration |
12 |
| sample storage location |
Swedish Center for Communicable Disease Control |
| sample storage temperature |
-80 |
| sequencing method |
Illumina |
| sequencing run |
170512 |
| target gene |
16S rRNA gene |
| target subfragment |
16S rRNA, V3-V4 |