home > sra-sample > ERS4423829
identifier ERS4423829
type sra-sample
sameAs
biosample  SAMEA6674291
organism human gut metagenome
attributes
ENA first public  2020-04-14
ENA last update  2020-04-13
External Id  SAMEA6674291
INSDC center alias  UCSDMI
INSDC center name  University of California San Diego Microbiome Initiative
INSDC first public  2020-04-14T16:28:04Z
INSDC last update  2020-04-13T20:24:51Z
INSDC status  public
Submitter Id  qiita_sid_10317:10317.000050338
acid_reflux  I do not have this condition
acne medication  No
acne_medication_otc  No
add_adhd  I do not have this condition
age cat  50s
age years  56
age_corrected  56
alcohol consumption  Yes
alcohol_frequency  Occasionally (1-2 times/week)
alcohol_types  Unspecified
alcohol_types_beercider  No
alcohol_types_red_wine  No
alcohol_types_sour_beers  No
alcohol_types_spiritshard_alcohol  Yes
alcohol_types_unspecified  No
alcohol_types_white_wine  No
allergic to i have no food allergies that i know of  Yes
allergic_to  Unspecified
allergic_to_other  No
allergic_to_peanuts  No
allergic_to_shellfish  No
allergic_to_tree_nuts  No
allergic_to_unspecified  No
alzheimers  I do not have this condition
antibiotic_history  I have not taken antibiotics in the past year.
appendix_removed  No
artificial_sweeteners  Never
asd  I do not have this condition
assigned_from_geo  Yes
autoimmune  I do not have this condition
birth year  1962
bmi_cat  Overweight
body habitat  UBERON:feces
body product  UBERON:feces
body site  UBERON:feces
bowel_movement_frequency  One
bowel_movement_quality  I tend to have normal formed stool - Type 3 and 4
breastmilk_formula_ensure  No
cancer  I do not have this condition
cancer treatment  Unspecified
cardiovascular_disease  I do not have this condition
cat  No
cdiff  I do not have this condition
census_region  West
chickenpox  Yes
clinical condition  I do not have this condition
collection month  December
collection season  Winter
consume_animal_products_abx  Yes
contraceptive  No
cosmetics_frequency  Daily
country  USA
country of birth  United States
country_residence  United States
csection  No
deodorant_use  I do not use deodorant or an antiperspirant
depression_bipolar_schizophrenia  Unspecified
diabetes  I do not have this condition
diabetes type  Unspecified
diet type  Omnivore
dna_extracted  Yes
dog  No
dominant hand  I am right handed
drinking_water_source  Bottled
drinks_per_session  1
economic_region  Far West
elevation  53.7
env biome  dense settlement biome
env feature  human-associated habitat
env package  human-gut
env_material  feces
epilepsy_or_seizure_disorder  I do not have this condition
exercise_frequency  Rarely (a few times/month)
exercise_location  Depends on the season
fed_as_infant  Primarily breast milk
fermented_plant_frequency  Regularly (3-5 times/week)
flossing_frequency  Regularly (3-5 times/week)
flu_vaccine_date  I have not gotten the flu vaccine in the past year.
frozen_dessert_frequency  Never
fruit_frequency  Rarely (less than once/week)
fungal_overgrowth  Self-diagnosed
geo loc name  USA:WA
gluten  No
height cm  160
height_units  centimeters
high_fat_red_meat_frequency  Rarely (less than once/week)
homecooked_meals_frequency  Regularly (3-5 times/week)
host common name  human
host taxid  9606
ibd  I do not have this condition
ibd diagnosis  Unspecified
ibd_diagnosis_refined  Unspecified
ibs  I do not have this condition
kidney_disease  I do not have this condition
lactose  No
last_move  I have lived in my current state of residence for more than a year.
last_travel  1 year
latitude  47.6
level_of_education  Graduate or Professional degree
liver_disease  I do not have this condition
livingwith  Yes
longitude  -122.4
lowgrain_diet_type  Unspecified
lung disease  I do not have this condition
meat_eggs_frequency  Regularly (3-5 times/week)
mental_illness  No
mental_illness_type  Unspecified
mental_illness_type_anorexia_nervosa  No
mental_illness_type_bipolar_disorder  No
mental_illness_type_bulimia_nervosa  No
mental_illness_type_depression  No
mental_illness_type_ptsd_posttraumatic_stress_disorder  No
mental_illness_type_schizophrenia  No
mental_illness_type_substance_abuse  No
mental_illness_type_unspecified  Yes
migraine  I do not have this condition
milk_cheese_frequency  Regularly (3-5 times/week)
milk_substitute_frequency  Rarely (less than once/week)
multivitamin  Unspecified
nail_biter  No
non_food_allergies  Unspecified
non_food_allergies_beestings  No
non_food_allergies_drug_eg_penicillin  No
non_food_allergies_pet_dander  No
non_food_allergies_poison_ivyoak  No
non_food_allergies_sun  No
non_food_allergies_unspecified  Yes
olive_oil  Regularly (3-5 times/week)
one_liter_of_water_a_day_frequency  Daily
other_supplement_frequency  Yes
pets_other  No
physical_specimen_remaining  Yes
pku  I do not have this condition
pool_frequency  Never
poultry_frequency  Occasionally (1-2 times/week)
pregnant  No
prepared_meals_frequency  Occasionally (1-2 times/week)
probiotic_frequency  Rarely (a few times/month)
public  Yes
race  Caucasian
ready_to_eat_meals_frequency  Never
red_meat_frequency  Occasionally (1-2 times/week)
roommates_in_study  No
salted_snacks_frequency  Rarely (less than once/week)
sample name  qiita_sid_10317:10317.000050338
sample type  Stool
seafood_frequency  Rarely (less than once/week)
seasonal_allergies  No
sex  female
sibo  I do not have this condition
skin_condition  I do not have this condition
sleep_duration  7-8 hours
smoking_frequency  Never
softener  No
specialized_diet  Unspecified
specialized_diet_exclude_dairy  No
specialized_diet_exclude_nightshades  No
specialized_diet_exclude_refined_sugars  No
specialized_diet_fodmap  No
specialized_diet_halaal  No
specialized_diet_i_do_not_eat_a_specialized_diet  No
specialized_diet_kosher  No
specialized_diet_modified_paleo_diet  No
specialized_diet_other_restrictions_not_described_here  No
specialized_diet_paleodiet_or_primal_diet  No
specialized_diet_raw_food_diet  No
specialized_diet_unspecified  No
specialized_diet_westenprice_or_other_lowgrain_low_processed_food_diet  Yes
state  WA
subset_age  true
subset_antibiotic_history  true
subset_bmi  true
subset_diabetes  true
subset_healthy  true
subset_ibd  true
sugar_sweetened_drink_frequency  Never
sugary_sweets_frequency  Rarely (less than once/week)
teethbrushing_frequency  Daily
thyroid  I do not have this condition
tonsils_removed  Yes
types_of_plants  Less than 5
vegetable_frequency  Regularly (3-5 times/week)
vitamin_b_supplement_frequency  Never
vitamin_d_supplement_frequency  Never
vivid_dreams  Rarely (a few times/month)
weight kg  71
weight_change  Remained stable
weight_units  kilograms
whole_eggs  Regularly (3-5 times/week)
whole_grain_frequency  Never
properties 
{...}
dbXrefs
bioproject  PRJEB11419
sra-run  ERR4019182
sra-submission  ERA2421688
biosample  SAMEA6674291
sra-study  ERP012803
sra-experiment  ERX4020570
distribution JSONJSON-LD
Download
ERA2421688.sample.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2020-04-18T18:47:49Z
dateModified 2021-09-29T04:19:15Z
datePublished 2020-04-19T01:07:41Z