home > sra-sample > ERS478011
identifier ERS478011
type sra-sample
sameAs
biosample  SAMEA2624976
organism marine metagenome
attributes
Alias  TARA_A100000556
Chlorophyll Sensor  0.0774
Citation  tbd
Depth  50
Description  This sample (TARA_A100000556) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-11-18T13:52Z at station TARA_023 (latitudeN=42.1694, longitudeE=17.7179) from a deep chlorophyll maximum layer (ENVO:xxxxxxxx) at a depth of 48-52 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic/transcriptomic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.
ENA checklist  ERC000030
Environment (Biome)  marine biome (ENVO:00000447)
Environment (Feature)  deep chlorophyll maximum layer (ENVO:xxxxxxxx)
Environment (Material)  particulate matter, including plankton (ENVO:xxxxxxxx)
Environmental Package  water
Event Date/Time End  2009-11-18T14:06Z
Event Date/Time Start  2009-11-18T13:52Z
Event Label  TARA_20091118T1352Z_023_EVENT_NET
Further Details  tbd
INSDC center alias  GSC
INSDC center name  Genoscope
INSDC first public  2014-06-26T17:01:30Z
INSDC last update  2014-11-06T09:10:08Z
INSDC status  public
Last Update Date  2014-05-01Z
Latitude End  42.169
Latitude Start  42.1694
Longitude End  17.718
Longitude Start  17.7179
Marine Region  (search radius=5 degree) Marine Ecoregion:Adriatic Sea (MRGID:3314), Marine Ecoregion:Ionian Sea (MRGID:3351)
Nitrate Sensor  99999
Oxygen Sensor  226.595929
Project Name  Tara Oceans
Protocol Label  PROT_NUC-RNA(1L)_N20-180
SRA accession  ERS478011
Salinity Sensor  38.340893
Sample Collection Device  PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5
Sample Name  ERS478011
Sample Status  This version is NOT FINAL but can be used to provide data discovery services
Sampling Campaign  TARA_20091111Z
Sampling Platform  SV Tara
Sampling Station  TARA_023
Size Fraction Lower Threshold  20
Size Fraction Upper Threshold  180
Temperature  15.868114
Title  TARA_20091118T1352Z_023_EVENT_NET_N1+N2_D_(48-52m)_PROT_NUC-RNA(1L)_N20-180_TARA_A100000556
properties 
{...}
dbXrefs
bioproject  PRJEB16766PRJEB6605PRJEB6609PRJEB6610
sra-run  ERR1717994ERR550380ERR550513ERR562533
sra-submission  ERA744327ERA323213ERA323266ERA329958
biosample  SAMEA2624976
sra-study  ERP018626ERP006152ERP006156ERP006157
sra-experiment  ERX1788207ERX509466ERX509600ERX521502
distribution JSONJSON-LD
Download
ERA329958.sample.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-06-27T07:35:43Z
dateModified 2019-04-24T10:34:37Z
datePublished 2014-06-27T07:35:43Z