home > sra-sample > ERS478033
identifier ERS478033
type sra-sample
sameAs
biosample  SAMEA2611384
organism marine metagenome
attributes
Alias  TARA_A100001646
Chlorophyll Sensor  0.0084
Citation  tbd
Depth  5
Description  This sample (TARA_A100001646) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T11:13Z at station TARA_030 (latitudeN=33.9178, longitudeE=32.8849) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (20-180 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.
ENA checklist  ERC000030
Environment (Biome)  marine biome (ENVO:00000447)
Environment (Feature)  surface water (ENVO:00002042) layer
Environment (Material)  particulate matter, including plankton (ENVO:xxxxxxxx)
Environmental Package  water
Event Date/Time End  2009-12-15T11:30Z
Event Date/Time Start  2009-12-15T11:13Z
Event Label  TARA_20091215T1113Z_030_EVENT_NET
Further Details  tbd
INSDC center alias  GSC
INSDC center name  Genoscope
INSDC first public  2014-06-23T17:00:58Z
INSDC last update  2014-11-06T09:10:08Z
INSDC status  public
Last Update Date  2014-05-01Z
Latitude End  33.9176
Latitude Start  33.9178
Longitude End  32.8828
Longitude Start  32.8849
Marine Region  (search radius=5 degree) Marine Ecoregion:Levantine Sea (MRGID:21895)
Nitrate Sensor  -0.74885
Oxygen Sensor  207.567167
Project Name  Tara Oceans
Protocol Label  PROT_NUC-DNA(1L)_N20-180
SRA accession  ERS478033
Salinity Sensor  39.425058
Sample Collection Device  PLANKTON NET, TYPE=Double, MESH_Size_(�m)=20, MOUTH_Opening_(m^2)=0.192442, LENGTH_(m)=2.5
Sample Name  ERS478033
Sample Status  This version is NOT FINAL but can be used to provide data discovery services
Sampling Campaign  TARA_20091214Z
Sampling Platform  SV Tara
Sampling Station  TARA_030
Size Fraction Lower Threshold  20
Size Fraction Upper Threshold  180
Temperature  20.45375
Title  TARA_20091215T1113Z_030_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-DNA(1L)_N20-180_TARA_A100001646
properties 
{...}
dbXrefs
bioproject  PRJEB16766PRJEB4352PRJEB6609PRJEB6610
sra-run  ERR1717979ERR538189ERR550525ERR562515
sra-submission  ERA744327ERA320049ERA323266ERA329958
biosample  SAMEA2611384
sra-study  ERP018626ERP003628ERP006156ERP006157
sra-experiment  ERX1788192ERX503389ERX509591ERX521387
distribution JSONJSON-LD
Download
ERA329958.sample.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-06-25T05:23:33Z
dateModified 2019-04-24T08:15:58Z
datePublished 2014-06-25T05:23:33Z