home > sra-sample > ERS478036
identifier ERS478036
type sra-sample
sameAs
biosample  SAMEA2624980
organism marine metagenome
attributes
Alias  TARA_A100001648
Chlorophyll Sensor  0.0233
Citation  tbd
Depth  5
Description  This sample (TARA_A100001648) was collected in the marine biome (ENVO:00000447) during Tara Oceans expedition on date/time=2009-12-15T12:44Z at station TARA_030 (latitudeN=33.9184, longitudeE=32.86) from a surface water (ENVO:00002042) layer at a depth of 3-7 m, using a PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3. The sample material (particulate matter, including plankton (ENVO:xxxxxxxx)) was size-fractionated (180-2000 micrometres) and preserved on board in liquid nitrogen for later phylogenetic analysis of protist (unicellular eukaryote) nucleotide sequences identification by pyrosequencing methods.
ENA checklist  ERC000030
Environment (Biome)  marine biome (ENVO:00000447)
Environment (Feature)  surface water (ENVO:00002042) layer
Environment (Material)  particulate matter, including plankton (ENVO:xxxxxxxx)
Environmental Package  water
Event Date/Time End  2009-12-15T12:59Z
Event Date/Time Start  2009-12-15T12:44Z
Event Label  TARA_20091215T1244Z_030_EVENT_NET
Further Details  tbd
INSDC center alias  GSC
INSDC center name  Genoscope
INSDC first public  2014-06-26T17:01:30Z
INSDC last update  2014-11-06T09:09:25Z
INSDC status  public
Last Update Date  2014-05-01Z
Latitude End  33.9187
Latitude Start  33.9184
Longitude End  32.8553
Longitude Start  32.86
Marine Region  (search radius=5 degree) Marine Ecoregion:Levantine Sea (MRGID:21895)
Nitrate Sensor  -0.147072
Oxygen Sensor  207.909583
Project Name  Tara Oceans
Protocol Label  PROT_NUC-DNA(1L)_N180-2000
SRA accession  ERS478036
Salinity Sensor  39.425358
Sample Collection Device  PLANKTON NET, TYPE=Bongo, MESH_Size_(�m)=180, MOUTH_Opening_(m^2)=0.258319, LENGTH_(m)=3
Sample Name  ERS478036
Sample Status  This version is NOT FINAL but can be used to provide data discovery services
Sampling Campaign  TARA_20091214Z
Sampling Platform  SV Tara
Sampling Station  TARA_030
Size Fraction Lower Threshold  180
Size Fraction Upper Threshold  2000
Temperature  20.467475
Title  TARA_20091215T1244Z_030_EVENT_NET_N1+N2_S_(3-7m)_PROT_NUC-DNA(1L)_N180-2000_TARA_A100001648
properties 
{...}
dbXrefs
bioproject  PRJEB16766PRJEB6605PRJEB6609PRJEB6610
sra-run  ERR1718807ERR550401ERR550517ERR562529
sra-submission  ERA744327ERA323213ERA323266ERA329958
biosample  SAMEA2624980
sra-study  ERP018626ERP006152ERP006156ERP006157
sra-experiment  ERX1789020ERX509454ERX509582ERX521453
distribution JSONJSON-LD
Download
ERA329958.sample.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2014-06-27T07:35:43Z
dateModified 2019-04-24T10:34:37Z
datePublished 2014-06-27T07:35:43Z