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Taxon	Taxonomy ID	Rank
Encephalitozoon ↑	6033	genus
Encephalitozoon cuniculi	6035	species
- Encephalitozoon cuniculi EC1	986730	strain
- Encephalitozoon cuniculi EC2	989654	strain
- Encephalitozoon cuniculi EC3	989655	strain
- Encephalitozoon cuniculi EcunII-CZ	1290881	strain
- Encephalitozoon cuniculi EcunIII-L	1355160	strain
- Encephalitozoon cuniculi GB-M1	284813	strain
Encephalitozoon hellem	27973	species
- Encephalitozoon hellem ATCC 50504	907965	strain
Encephalitozoon intestinalis	58839	species
- Encephalitozoon intestinalis ATCC 50506	876142	strain
- Encephalitozoon lacertae	88455	species
- Encephalitozoon pogonae	1795764	species
Encephalitozoon romaleae	571949	species
- Encephalitozoon romaleae SJ-2008	1178016	strain
unclassified Encephalitozoon	2632284	no rank
- Encephalitozoon sp.	31283	species
- Encephalitozoon sp. 'bieneusi'	31282	species
- Encephalitozoon sp. CF-ENC1	384847	species
- Encephalitozoon sp. CR0893	1701406	species
- Encephalitozoon sp. MB-2008	527194	species