home > bioproject > PRJDB6130
identifier PRJDB6130
type bioproject
sameAs
organism Cucumis sativus var. sativus
title Study of hydrotropism-related gene expression in cucumber roots exposed to different gravitational conditions
description Plants have developed unique strategies for stress mitigation or adaptation to their surroundings over the course of their evolution. One of these strategies is tropism; for an instance, plant roots grow downward via positive gravitropism in response to gravity and bend towards wetter areas via positive hydrotropism in response to moisture gradients as well. In cucumber (Cucumis sativus) roots, gravitropism interferes with hydrotropism to the extent that hydrotropism is only minimally expressed under stationary conditions. Rotation of plants in a two-axis (3D) clinostat can remove gravity responses from plants, and hydrotropism is clearly expressed in clinorotated cucumber seedlings. To elucidate how gravitropic responses interfered with hydrotropism in cucumber roots, RNA-Seq was used to compare gene expression between hydrotropically bending cucumber roots under clinostat conditions and cucumber roots grown under stationary conditions while exposed to a moisture gradient.
data type Transcriptome or Gene Expression
publication
29324818
properties 
{...}
dbXrefs
sra-run  DRR099594DRR099595DRR099596DRR099597DRR099598DRR099599DRR099600DRR099601DRR099602DRR099603 More
sra-submission  DRA006032
biosample  SAMD00089537SAMD00089538SAMD00089539SAMD00089540SAMD00089541SAMD00089542SAMD00089543SAMD00089544SAMD00089545SAMD00089546 More
sra-study  DRP003988
sra-sample  DRS057396DRS057397DRS057398DRS057399DRS057400DRS057401DRS057402DRS057403DRS057404DRS057405 More
sra-experiment  DRX093072DRX093073DRX093074DRX093075DRX093076DRX093077DRX093078DRX093079DRX093080DRX093081 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2017-07-31T05:40:06+09:00
dateModified 2018-02-06T05:42:13+09:00
datePublished 2018-01-11T13:46:06+09:00